; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G011250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G011250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAminoacyl-tRNA hydrolase
Genome locationchr08:19891091..19893846
RNA-Seq ExpressionLsi08G011250
SyntenyLsi08G011250
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR002833 - Peptidyl-tRNA hydrolase, PTH2
IPR023476 - Peptidyl-tRNA hydrolase II domain superfamily
IPR042237 - Putative peptidyl-tRNA hydrolase PTRHD1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585426.1 putative peptidyl-tRNA hydrolase PTRHD1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-7972.57Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSIS S+RLC N+R   LPSS    RS N NS  FSSASMSES ES+SV P DDGGAKAEE ADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV-----------------------REET
        AIWLNK+DPHT++YCSP NIDSMHKVTLEVKGETQ+VNLSEKLKANSI+HKLW+EQPENIPTCLA+KPYPKSV                       REET
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV-----------------------REET

Query:  EPPLAFNVGGLDNTSAEGACPWSWLP
        EPP  F VGGLD  SA G CP SWLP
Subjt:  EPPLAFNVGGLDNTSAEGACPWSWLP

XP_022962062.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]1.9e-7384.97Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSISKST+LCS SR RV PSS L  RS NRNSN FSS SMSESAESNS PPPDD     E+TADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        A+WLNK+DPHT +YCSPHNIDSMHKVTLEVKGETQ+VNLSEKL+ANSI HKLWIEQPENIPTCLATKPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

XP_022996792.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima]1.6e-7284.97Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSISKST+LCS SR RV PSS L  RS NRNSN FSSASMSESAESNS PPPDD     E+ ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        AIWLNK+DP T++YCSPHNIDSMHKVTLEVKGETQ+VNLSEKLK NSI HKLWIEQPENIPTCLATKPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

XP_023546189.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]1.0e-7486.13Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS F FSISKST+LCS SR RV PSS L  RS NRNSN FSSASMSESAESNS PPPDDG    E+TADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        A+WLNK+DPHT++YCSPHNIDSMHKVTLEVKGETQ+VNLSEKLKA+SI HKLWIEQPENIPTCLATKPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

XP_038884124.1 putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]1.1e-8190.75Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+FAFSISKSTRLCS S PRV PSS L  RS NRNSNPFSSASMS+SAE+NSVPPPDDGGAKAEE ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        AIWLNK+DPHT+DYCSPHNIDSMHKVTLEVKGETQ+VNLSEKLKANSI+HKLWIEQPENIPTCLATKPYPKS+
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

TrEMBL top hitse value%identityAlignment
A0A0A0LLQ2 Aminoacyl-tRNA hydrolase2.3e-7283.33Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEET-ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASV
        AS+F  SISKS  LCS  R RV PSS L   SS R ++PF SASMS+S E+NSV  PDD GAKAEET ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASV
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEET-ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASV

Query:  SAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        SAIWLNK+DPHT+DYC+PHNIDSMHKVTLEVKGETQMVNLSEKLKANSI+HKLWIEQPENIPTCLATKPYPKSV
Subjt:  SAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

A0A6J1HBR1 Aminoacyl-tRNA hydrolase9.3e-7484.97Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSISKST+LCS SR RV PSS L  RS NRNSN FSS SMSESAESNS PPPDD     E+TADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        A+WLNK+DPHT +YCSPHNIDSMHKVTLEVKGETQ+VNLSEKL+ANSI HKLWIEQPENIPTCLATKPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

A0A6J1K304 Aminoacyl-tRNA hydrolase7.8e-7384.97Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSISKST+LCS SR RV PSS L  RS NRNSN FSSASMSESAESNS PPPDD     E+ ADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        AIWLNK+DP T++YCSPHNIDSMHKVTLEVKGETQ+VNLSEKLK NSI HKLWIEQPENIPTCLATKPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

A0A6J1KJQ6 Aminoacyl-tRNA hydrolase4.8e-7083.24Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSIS S RLCSN+R   LPSS     S N NS  FSSASMSESAESNSV P DDGGAKAEE ADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        AIWLNK+DPHT++YCSP NIDSMHKVTLEVKGETQ+VNLSEKLKANSI+HKLW+EQPENIPTCLA+KPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

A0A6J1KTS0 Aminoacyl-tRNA hydrolase4.8e-7083.24Show/hide
Query:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS
        AS+F FSIS S RLCSN+R   LPSS     S N NS  FSSASMSESAESNSV P DDGGAKAEE ADVL+QYVVLRRDLIDSWPLGSVVTQGCHASVS
Subjt:  ASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVS

Query:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV
        AIWLNK+DPHT++YCSP NIDSMHKVTLEVKGETQ+VNLSEKLKANSI+HKLW+EQPENIPTCLA+KPYPKSV
Subjt:  AIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSV

SwissProt top hitse value%identityAlignment
D3Z4S3 Putative peptidyl-tRNA hydrolase PTRHD12.1e-2247.62Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT
        +L+QY+VLR+DL     SWP G++V Q CHA+ +A+ L+++ PHT  Y     +  M KV LE   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT

Query:  KPYPK
        +PYPK
Subjt:  KPYPK

Q3SZ85 Putative peptidyl-tRNA hydrolase PTRHD12.2e-2450.48Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT
        +L+QY+VLR+DL     SWP G+VV Q CHA+ +A+ L+++ PHT  Y     ++ M KV LE   ET +  L+E L+  +I HKLW+EQPENIPTC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT

Query:  KPYPK
        +PYPK
Subjt:  KPYPK

Q6GMV3 Putative peptidyl-tRNA hydrolase PTRHD16.1e-2247.62Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT
        VL+QY+VLR+DL     SWP G++V Q CHA+ +A+  +++ PHT  Y     +  M KV LE   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLAT

Query:  KPYPK
        +PYPK
Subjt:  KPYPK

Arabidopsis top hitse value%identityAlignment
AT5G10700.1 Peptidyl-tRNA hydrolase II (PTH2) family protein4.3e-4760.12Show/hide
Query:  AFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL
        AF     TR  S   PR+    F        +   F++AS S S ++  +    D  + AE+  DV++QYVVLRRDLIDSWPLGSVVTQGCHASV+AIW 
Subjt:  AFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAIWL

Query:  NKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKS
         K+DP T  YC P +IDSMHKVTLEVKGETQM+NLSEKLK   I HKLW+EQPENIPTC+ATKPYPKS
Subjt:  NKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTGGGAAAAACCAGAATATAATGTTCAACCAGAATCAAGTTGTAGATATGATGAACATGAAAACGTGGCTTCTCAATTCGCATTCTCCATTTCCAAATCCAC
GAGGCTCTGCTCAAATTCAAGGCCTAGAGTTCTCCCATCTTCTTTCCTGAGACCCCGCTCTTCGAATCGAAATTCTAATCCATTTAGCTCTGCCTCCATGAGTGAATCCG
CTGAAAGTAATTCTGTTCCTCCACCAGACGATGGCGGAGCGAAGGCAGAGGAGACAGCCGATGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATTTGATTGATTCGTGG
CCGCTCGGTAGCGTCGTAACTCAGGGATGCCATGCTTCAGTCTCTGCCATTTGGTTGAATAAAGAAGATCCTCACACTACTGACTACTGTAGTCCACACAATATCGATTC
TATGCACAAGGTTACTCTAGAAGTCAAGGGAGAAACTCAGATGGTTAACTTGTCAGAGAAACTTAAAGCAAACTCAATCATACATAAACTATGGATAGAACAACCAGAAA
ACATTCCAACATGTCTTGCCACAAAACCTTACCCCAAATCTGTTAGGGAGGAAACAGAACCTCCATTGGCTTTCAATGTCGGTGGCTTGGATAATACCTCCGCAGAAGGG
GCATGCCCCTGGAGCTGGTTGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTGGGAAAAACCAGAATATAATGTTCAACCAGAATCAAGTTGTAGATATGATGAACATGAAAACGTGGCTTCTCAATTCGCATTCTCCATTTCCAAATCCAC
GAGGCTCTGCTCAAATTCAAGGCCTAGAGTTCTCCCATCTTCTTTCCTGAGACCCCGCTCTTCGAATCGAAATTCTAATCCATTTAGCTCTGCCTCCATGAGTGAATCCG
CTGAAAGTAATTCTGTTCCTCCACCAGACGATGGCGGAGCGAAGGCAGAGGAGACAGCCGATGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATTTGATTGATTCGTGG
CCGCTCGGTAGCGTCGTAACTCAGGGATGCCATGCTTCAGTCTCTGCCATTTGGTTGAATAAAGAAGATCCTCACACTACTGACTACTGTAGTCCACACAATATCGATTC
TATGCACAAGGTTACTCTAGAAGTCAAGGGAGAAACTCAGATGGTTAACTTGTCAGAGAAACTTAAAGCAAACTCAATCATACATAAACTATGGATAGAACAACCAGAAA
ACATTCCAACATGTCTTGCCACAAAACCTTACCCCAAATCTGTTAGGGAGGAAACAGAACCTCCATTGGCTTTCAATGTCGGTGGCTTGGATAATACCTCCGCAGAAGGG
GCATGCCCCTGGAGCTGGTTGCCTTGA
Protein sequenceShow/hide protein sequence
MGKWEKPEYNVQPESSCRYDEHENVASQFAFSISKSTRLCSNSRPRVLPSSFLRPRSSNRNSNPFSSASMSESAESNSVPPPDDGGAKAEETADVLIQYVVLRRDLIDSW
PLGSVVTQGCHASVSAIWLNKEDPHTTDYCSPHNIDSMHKVTLEVKGETQMVNLSEKLKANSIIHKLWIEQPENIPTCLATKPYPKSVREETEPPLAFNVGGLDNTSAEG
ACPWSWLP