; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G011800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G011800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationchr08:20409473..20410706
RNA-Seq ExpressionLsi08G011800
SyntenyLsi08G011800
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585459.1 Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia]4.0e-8394.19Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

XP_004138734.1 uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus]5.1e-8696.13Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

XP_023002539.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]8.1e-8494.84Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

XP_023538151.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]3.1e-8394.19Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG +YGGGR  GSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

XP_038884423.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida]1.9e-8596.13Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADF GGSYG GR +GSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDE SAAAYDGDLT
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        RMRGFNFGGASNRPGWKSGDWIC RSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

TrEMBL top hitse value%identityAlignment
A0A0A0LLW7 Uncharacterized protein2.5e-8696.13Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

A0A1S3BBL4 uncharacterized RNA-binding protein C17H9.04c2.5e-8696.13Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSCQRCG+PRADFGGGSYGGGR  GSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGA+KDE SAAAYDGDL 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

A0A6J1BUS6 uncharacterized RNA-binding protein C17H9.04c-like6.3e-8290.32Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCGEPRADFGGG YGG   VGSSSFGFTTGPDVRPGDWYC + NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSN  SPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

A0A6J1GJE4 TATA-binding protein-associated factor 2N-like1.7e-8293.55Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGG  YGGGR  GSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        R+RGFNFGGASN PGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

A0A6J1KQR0 uncharacterized RNA-binding protein C17H9.04c-like3.9e-8494.84Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT
        MSRPGDWNCRSCNHLNFQRRDSC RCG+PRADFGGG YGGGR  GSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGASKDEASAAAYDGDL+
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLT

Query:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
        R+RGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
Subjt:  RMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c2.7e-1328.12Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCQRCGEP--------------RADFG-GGSYGGGRAVGSSSFG--------------------------------FTTGP
        RPGDWNC  C   NFQRR SC RC  P                DF  G SYG G +   +++G                                F    
Subjt:  RPGDWNCRSCNHLNFQRRDSCQRCGEP--------------RADFG-GGSYGGGRAVGSSSFG--------------------------------FTTGP

Query:  DVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAA----------------------------------YD----GDLTRMRGFNFGGAS------
          R GDW C    CG HNFA    C +CGAS+  A+  A                                  Y       +T   G NFGG +      
Subjt:  DVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAA----------------------------------YD----GDLTRMRGFNFGGAS------

Query:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS
                  +RP      GDW+C   +C   NF  R  C RCNAP  SN + P S
Subjt:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS

Q27294 RNA-binding protein cabeza2.7e-0532.76Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRAD---FGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDL
        R GDW C SCN+ NF  R+ C RC  P+ D     GG  GGG   G    G+  G D   G         G HN        + G S+         G  
Subjt:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRAD---FGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDL

Query:  TRMRGFNFGGASNRPG
        +R    N GG   R G
Subjt:  TRMRGFNFGGASNRPG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 22.3e-0435.29Show/hide
Query:  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASK
        GDW C  + C ++NF RR SC RCG  +         GG  +G +    + G      DW C    CG  N+A RS C  C   K
Subjt:  GDWNC--RSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASK

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein3.3e-0628.72Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYD
        + GDW C++CN LNF +   C RC +                        T   + PG+W C   +C   NF   SIC KC   + +A+    D
Subjt:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYD

AT2G17975.1 zinc finger (Ran-binding) family protein8.6e-1534.36Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEA--SAAAYDGD--
        R GDW C  C + N+  R  C RC +PR      +    + +             R GDW CT   C  +N+ASR  C KCG SK+ A  SA A  G   
Subjt:  RPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEA--SAAAYDGD--

Query:  LTRMRGFNFGGAS-NRPG-----------------WKSGDWICARSDCNEHNFASRRECFRCN
         T +  F  G  S ++PG                 W+SGDWIC    C  HN++SR +C +CN
Subjt:  LTRMRGFNFGGAS-NRPG-----------------WKSGDWICARSDCNEHNFASRRECFRCN

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.3e-3144.76Show/hide
Query:  GDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRG
        GDW C +C H NF++R+SCQ+CG P+  FGG        V  S++ +    +V  GDWYC   NCG+HN+ASR+ C++CG  K E +   Y     +M  
Subjt:  GDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRG

Query:  FNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD
        +   GA+  PGWK+GDW+C R  C  HN+ASR ECF+C   RD
Subjt:  FNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein2.2e-5562.94Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGG------GSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASA--
        MSRPGDWNCRSC+HLNFQRRDSCQRCG+ R+  GG      G++ GGRA+  S+FGFTTG DVRPGDWYCTV NCG HNFASRS CFKCG  KDE  A  
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGG------GSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASA--

Query:  --------AAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY
                A +D D+ R R    GG   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD ++++ +
Subjt:  --------AAYDGDLTRMRGFNFGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.6e-5363.01Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYG-----GGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDE---ASA
        M+RPGDWNCR C+HLNFQRRDSCQRC EPR   GG S       GGR V SSSFGF TGPDVRPGDWYC + +CG HNFA+RS CFKCGA+KDE   +SA
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYG-----GGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDE---ASA

Query:  AAYDGDLTRMRG-----FNFGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY
        AA  G +    G     F FGG+S+      R  WKSGDWIC RS CNEHNFASR ECFRCNAP++  ++ PY
Subjt:  AAYDGDLTRMRG-----FNFGGASN------RPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAG
CTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACT
TCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCC
TCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGA
TTCCAACAGCAAGTCACCATACTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTAGGCCGGGGGATTGGAATTGCAGGTCTTGCAACCATCTCAACTTTCAACGAAGGGATTCGTGTCAGCGATGTGGAGAGCCTAGGGCCGACTTCGGTGGCGGAAG
CTACGGCGGCGGAAGAGCTGTTGGTTCTTCGTCCTTCGGTTTCACTACCGGCCCCGACGTCCGCCCTGGTGATTGGTACTGCACCGTCGCCAACTGCGGCGCTCATAACT
TCGCCAGCCGCTCTATCTGCTTCAAGTGCGGCGCCTCCAAAGATGAGGCTTCCGCCGCCGCCTACGACGGCGATTTGACCAGAATGAGAGGCTTTAACTTCGGCGGTGCC
TCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGATCGGATTGCAATGAGCATAACTTTGCCAGCCGAAGGGAATGCTTTAGATGCAATGCGCCAAGGGA
TTCCAACAGCAAGTCACCATACTCGTAA
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCNHLNFQRRDSCQRCGEPRADFGGGSYGGGRAVGSSSFGFTTGPDVRPGDWYCTVANCGAHNFASRSICFKCGASKDEASAAAYDGDLTRMRGFNFGGA
SNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDSNSKSPYS