CuGenDBv2

Gene ID	Lsi08G011990
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	chr08:20555288..20555512
RNA-Seq Expression	Lsi08G011990
Synteny	Lsi08G011990
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR020003 - ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

AYC64355.1 ATP synthase CF1 subunit alpha [Pseudochlorodesmis sp. HV01306a]

9.4e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

AYC64609.1 ATP synthase CF1 subunit alpha [Halimeda minima]

9.4e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

AYQ94510.1 CF1 alpha subunit of ATP synthase [Cylindrocapsa geminella]

9.4e-14

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

YP_009238070.1 CF1 alpha subunit of ATP synthase [Neochloris aquatica]

9.4e-14

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

YP_009519687.1 ATP synthase CF1 subunit alpha [Udotea flabellum]

9.4e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

TrEMBL top hits

e value

%identity

Alignment

A0A0D6E2B0 ATP synthase subunit alpha, chloroplastic

4.6e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

A0A140H9Z2 ATP synthase subunit alpha, chloroplastic

4.6e-14

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

A0A2Z6FBN8 ATP synthase subunit alpha, chloroplastic

4.6e-14

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

A0A386AXA0 ATP synthase subunit alpha, chloroplastic

4.6e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

A0A386AY50 ATP synthase subunit alpha, chloroplastic

4.6e-14

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSAD+FNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

SwissProt top hits

e value

%identity

Alignment

A4QL91 ATP synthase subunit alpha, chloroplastic

2.1e-16

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Q09FX6 ATP synthase subunit alpha, chloroplastic

2.1e-16

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Q3C1H4 ATP synthase subunit alpha, chloroplastic

2.1e-16

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Q8MA05 ATP synthase subunit alpha, chloroplastic

2.1e-16

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Q8S8Y3 ATP synthase subunit alpha, chloroplastic

2.1e-16

93.75

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

1.7e-13

79.17

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQI L  +LF  GIRPAINVG+SVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

ATCG00120.1 ATP synthase subunit alpha

3.3e-17

91.67

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

ATMG01190.1 ATP synthase subunit 1

1.7e-13

79.17

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Query:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK
        +SAYIPTNVISITDGQI L  +LF  GIRPAINVG+SVSRVGSAA  K
Subjt:  LSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Sequences

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CDS sequence

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ATGCGAAGGGGGCCAGTCCAAGATCGTACTGTTGCTCTACAAAGACAACAGACGCTCTCAACGGCTAGGCGCCACTCTCTTTCAGCTTATATTCCTACTAATGTAATTTC
CATTACCGATGGACAAATATTCTTATCTGCCGATCTATTCAATTCTGGAATCAGACCTGCTATTAATGTGGGTATTTCCGTCTCCAGAGTAGGATCTGCAGCTCATGGGA
AATAG

mRNA sequence

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Protein sequence

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MRRGPVQDRTVALQRQQTLSTARRHSLSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAHGK

Lsi08G011990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome