CuGenDBv2

Gene ID	Lsi08G012260
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA ligase
Genome location	chr08:20724514..20724924
RNA-Seq Expression	Lsi08G012260
Synteny	Lsi08G012260
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]

8.5e-37

71.79

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Query:  SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDP
        SFCCFH          PS TP  SPCSWLKSTA ELS LL RCRYFLAR+ARRR  YLAS DFSYDSSSYALNF+DDCRDDH+FPFRDFTARFPP +KD 
Subjt:  SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDP

Query:  VP-PPKFAGSQDGIAIS
        +P   KFAGS   I IS
Subjt:  VP-PPKFAGSQDGIAIS

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]

9.5e-28

57.66

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDH
        ML  FH+S S  HKLKSS  CF  S      D PS   T+SPCSW KSTAAE  +LL RCRY +ARI R  RR+Y AS DF+YDSSSYALNFEDD R D 
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDH

Query:  EFPFRDFTARFPPAIKDPVPPPKFAGSQDGIA-ISSC
        EFP R+F AR P      +P  KFAGSQ G++ +++C
Subjt:  EFPFRDFTARFPPAIKDPVPPPKFAGSQDGIA-ISSC

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]

4.7e-51

75.76

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE
        MLPHFH+SP+   KLKSSFCCFH  QQ  FLDSPSK+PTRSPCSW KST  E   +L RCRY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D E
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE

Query:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI
        FPFR+FTARFPP IK+ VP  KFAGS+DGI++
Subjt:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]

4.0e-50

73.48

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE
        MLPHFH+SP+   KLKSSFCCFH  QQ  FLDSPSK+PT+SPCSW KST  E   +L RCRY LARIARRR++YLASVDF+YDSSSYALNF+DDCR+D E
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE

Query:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI
        FPFRDFTARFPP IK+  P  KFAGS+DGI++
Subjt:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]

2.3e-50

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE
        MLPHFH+SP+   KLKSSFCCFH  QQ  FLDSPSK+PT SPCSW KST  E   +L RCRY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D E
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE

Query:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI
        FPFR+FTARFPP IK+ VP  KFAGS+DGI++
Subjt:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDX7 uncharacterized protein LOC103488565

4.1e-37

71.79

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Query:  SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDP
        SFCCFH          PS TP  SPCSWLKSTA ELS LL RCRYFLAR+ARRR  YLAS DFSYDSSSYALNF+DDCRDDH+FPFRDFTARFPP +KD 
Subjt:  SFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARFPPAIKDP

Query:  VP-PPKFAGSQDGIAIS
        +P   KFAGS   I IS
Subjt:  VP-PPKFAGSQDGIAIS

A0A6J1BQU1 uncharacterized protein LOC111004768

4.6e-28

57.66

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDH
        ML  FH+S S  HKLKSS  CF  S      D PS   T+SPCSW KSTAAE  +LL RCRY +ARI R  RR+Y AS DF+YDSSSYALNFEDD R D 
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIAR-RRRKYLASVDFSYDSSSYALNFEDDCRDDH

Query:  EFPFRDFTARFPPAIKDPVPPPKFAGSQDGIA-ISSC
        EFP R+F AR P      +P  KFAGSQ G++ +++C
Subjt:  EFPFRDFTARFPPAIKDPVPPPKFAGSQDGIA-ISSC

A0A6J1HE78 uncharacterized protein LOC111462741

2.3e-51

75.76

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE
        MLPHFH+SP+   KLKSSFCCFH  QQ  FLDSPSK+PTRSPCSW KST  E   +L RCRY LARIARRR++YLASVDFSYDSSSYALNFEDDCR+D E
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE

Query:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI
        FPFR+FTARFPP IK+ VP  KFAGS+DGI++
Subjt:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI

A0A6J1K7R1 uncharacterized protein LOC111492424

1.9e-50

73.48

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Query:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE
        MLPHFH+SP+   KLKSSFCCFH  QQ  FLDSPSK+PT+SPCSW KST  E   +L RCRY LARIARRR++YLASVDF+YDSSSYALNF+DDCR+D E
Subjt:  MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHE

Query:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI
        FPFRDFTARFPP IK+  P  KFAGS+DGI++
Subjt:  FPFRDFTARFPPAIKDPVPPPKFAGSQDGIAI

A0A7N2QYM6 Uncharacterized protein

4.8e-17

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Query:  SLPHKLKSSFCCF----HTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKY---LASVDFSYDSSSYALNFEDDCRDDHEFP
        S+ HK+K+S CCF    H  QQ +  D P  T  RSP +WLKSTA EL E+ +RC  F++RI + RR +     S DFSYD SSYALNF+DD R D E P
Subjt:  SLPHKLKSSFCCF----HTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKY---LASVDFSYDSSSYALNFEDDCRDDHEFP

Query:  --FRDFTARFPPAIKD
          F D  A  PP   D
Subjt:  --FRDFTARFPPAIKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

3.3e-10

38.98

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Query:  HKLKSSFCCFHTS----QQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASV---------------DFSYDSSSYALNFED
        H+++S  CC   +     +   +    +TP RSP  WLKSTA EL EL  RCR   +RI    R    +                DFSYD  SYALNFED
Subjt:  HKLKSSFCCFHTS----QQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASV---------------DFSYDSSSYALNFED

Query:  DCRDDHEFPFRDFTARFP
        + R D +  F +FTAR P
Subjt:  DCRDDHEFPFRDFTARFP

AT5G35090.1 unknown protein

7.5e-07

32.89

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Query:  SLPHKLKSSFC---CFHTSQQHQFLDSPSKTPTRSPCSWLKSTAA---------------ELSELLYRCRYFLARI----------ARRRRKYLASVDFS
        SL  KLKS FC   CF T+  H   + P   P+ SP +  KST +                LS+   +C+  + R+           +  R++ A  DF 
Subjt:  SLPHKLKSSFC---CFHTSQQHQFLDSPSKTPTRSPCSWLKSTAA---------------ELSELLYRCRYFLARI----------ARRRRKYLASVDFS

Query:  YDSSSYALNFEDDCRDDH--EFPFRDFTARFPPAIKDPVPPPKFAGSQD
        YD SSYALNF+    DD+   FP R+F+AR P +      PP  A + D
Subjt:  YDSSSYALNFEDDCRDDH--EFPFRDFTARFPPAIKDPVPPPKFAGSQD

Sequences

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CDS sequence

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ATGTTACCCCATTTTCATTACTCTCCTTCTTTACCTCACAAGCTTAAATCCTCCTTCTGCTGTTTCCATACCTCCCAACAACACCAGTTTCTCGACTCTCCTTCCAAGAC
GCCGACAAGATCGCCGTGTTCTTGGTTAAAATCTACCGCCGCTGAACTGTCGGAGTTACTTTACCGGTGCCGGTATTTCCTTGCTCGGATAGCTCGCCGCCGGAGGAAGT
ACCTCGCCTCCGTCGACTTTTCCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGACTGCCGTGACGACCATGAGTTTCCCTTCAGAGATTTCACGGCTAGATTC
CCTCCGGCTATCAAGGACCCTGTTCCCCCTCCCAAATTCGCCGGATCTCAAGATGGAATCGCAATTTCCTCCTGTGGTTGA

mRNA sequence

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Protein sequence

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MLPHFHYSPSLPHKLKSSFCCFHTSQQHQFLDSPSKTPTRSPCSWLKSTAAELSELLYRCRYFLARIARRRRKYLASVDFSYDSSSYALNFEDDCRDDHEFPFRDFTARF
PPAIKDPVPPPKFAGSQDGIAISSCG

Lsi08G012260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome