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Lsi08G012330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G012330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L39
Genome locationchr08:20786919..20797131
RNA-Seq ExpressionLsi08G012330
SyntenyLsi08G012330
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AQK79747.1 60S ribosomal protein L39-1 [Zea mays]9.8e-1181.25Show/hide
Query:  RFCDVSF-LKRAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        RFC V+     AQPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  RFCDVSF-LKRAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

CAB4265840.1 unnamed protein product [Prunus armeniaca]4.4e-1168.18Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE
        PSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIR          ++   T  S GTGAA SS SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE

CAB4296430.1 unnamed protein product [Prunus armeniaca]4.4e-1168.18Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE
        PSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIR          ++   T  S GTGAA SS SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE

KAB5513865.1 hypothetical protein DKX38_027771 [Salix brachista]8.5e-1578.33Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSL---FFRCTMRSEGTGAALSSGSE
        PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRS     FRCT  S GTG  LS  SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSL---FFRCTMRSEGTGAALSSGSE

RWW84319.1 hypothetical protein BHE74_00007077 [Ensete ventricosum]1.4e-1249.51Show/hide
Query:  LRGFCFLFAVRSPPCRFPTLQDGNCFFLVLVVLLNSFFDLFCVTLPIDFCIGRFCDVSFLKRA--QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
        L G C   A RSP   +P+   G                LFC +LP         D  +       PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI
Subjt:  LRGFCFLFAVRSPPCRFPTLQDGNCFFLVLVVLLNSFFDLFCVTLPIDFCIGRFCDVSFLKRA--QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI

Query:  RSL
        RSL
Subjt:  RSL

TrEMBL top hitse value%identityAlignment
A0A0E0HLS5 Uncharacterized protein1.9e-1270.97Show/hide
Query:  RAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRCTMRSEGTGAALSSGSEFG
        R  PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTI          S GTGAA SSGSE G
Subjt:  RAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRCTMRSEGTGAALSSGSEFG

A0A5N5J8N4 Uncharacterized protein4.1e-1578.33Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSL---FFRCTMRSEGTGAALSSGSE
        PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRS     FRCT  S GTG  LS  SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSL---FFRCTMRSEGTGAALSSGSE

A0A6J5TP45 Uncharacterized protein2.1e-1168.18Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE
        PSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIR          ++   T  S GTGAA SS SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE

A0A6J5W488 Uncharacterized protein2.1e-1168.18Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE
        PSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIR          ++   T  S GTGAA SS SE
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR---------SLFFRCTMRSEGTGAALSSGSE

A0A6N2K479 Aspartate transaminase3.6e-1171.19Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRCTMRSEGTGAALSSGSEFG
        PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTI          S GTG  LS  SE G
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRCTMRSEGTGAALSSGSEFG

SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-13.5e-1191.43Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51425 60S ribosomal protein L397.0e-1294.29Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51426 60S ribosomal protein L39-27.0e-1294.29Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q5SMI4 60S ribosomal protein L39-32.0e-1191.43Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q6KAJ8 60S ribosomal protein L39-17.0e-1294.29Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein7.5e-0996.43Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIR
        IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT3G02190.1 Ribosomal protein L39 family protein8.0e-1185.71Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT4G31985.1 Ribosomal protein L39 family protein2.5e-1291.43Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGATAATTTCGGAAATGGCTTCCTGCTCCATGTAGGCCCATTTCAACCAGGCTTCAAAGTTTTGTTTAAGGAGCTCAAAAAGGCCTTTATGGATCAGCCCATTAC
ATTGTCCGTCAATAAAATGGGCTGGGCTTTTGATCAACTTCGGGGTTTCTGCTTCTTGTTCGCTGTTCGTAGCCCTCCCTGCCGGTTCCCGACTCTCCAAGATGGTAACT
GTTTCTTCCTTGTACTCGTTGTCCTTTTGAATTCTTTCTTTGATTTGTTCTGTGTTACACTTCCGATTGATTTTTGTATTGGGAGGTTTTGTGATGTAAGTTTTCTTAAA
CGTGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACCAT
CAGGTCTTTATTCTTCCGTTGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGGTTCTGAGTTTGGTGCCATTTATTATCACGCTAGTGCAGAGTTATATC
ATGGTCTTGTTCATTCAAGTATTCATGTGGACGAGAGGAGTTTGCATAACTCAAGGGAAAACCCAGTCGGGAAGAAAGACAAAAAGCAAACGGAGTTAAGTTACGCATGG
ATTAAGTGCCTTGACTGGAAGGTAGGCCCATTTCAACCAGGCCTCAAAGTTTTGTTCAAGGAGCTTAAAATAGGGCTTTATGGATCAGCCCATTACATTGTCCGTCAACA
AAATGGGCTGGGCTTTCAATCATGTTGGGGTTGCCTAGAACCGAGGCGAGCGGCATTGTTCTTCCGGTCCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGATAATTTCGGAAATGGCTTCCTGCTCCATGTAGGCCCATTTCAACCAGGCTTCAAAGTTTTGTTTAAGGAGCTCAAAAAGGCCTTTATGGATCAGCCCATTAC
ATTGTCCGTCAATAAAATGGGCTGGGCTTTTGATCAACTTCGGGGTTTCTGCTTCTTGTTCGCTGTTCGTAGCCCTCCCTGCCGGTTCCCGACTCTCCAAGATGGTAACT
GTTTCTTCCTTGTACTCGTTGTCCTTTTGAATTCTTTCTTTGATTTGTTCTGTGTTACACTTCCGATTGATTTTTGTATTGGGAGGTTTTGTGATGTAAGTTTTCTTAAA
CGTGCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCAATTCCTCACTGGATCCGTCTTAGGACCGACAATACCAT
CAGGTCTTTATTCTTCCGTTGTACAATGCGAAGCGAAGGCACTGGCGCCGCACTAAGCTCGGGTTCTGAGTTTGGTGCCATTTATTATCACGCTAGTGCAGAGTTATATC
ATGGTCTTGTTCATTCAAGTATTCATGTGGACGAGAGGAGTTTGCATAACTCAAGGGAAAACCCAGTCGGGAAGAAAGACAAAAAGCAAACGGAGTTAAGTTACGCATGG
ATTAAGTGCCTTGACTGGAAGGTAGGCCCATTTCAACCAGGCCTCAAAGTTTTGTTCAAGGAGCTTAAAATAGGGCTTTATGGATCAGCCCATTACATTGTCCGTCAACA
AAATGGGCTGGGCTTTCAATCATGTTGGGGTTGCCTAGAACCGAGGCGAGCGGCATTGTTCTTCCGGTCCTCATAA
Protein sequenceShow/hide protein sequence
MSDNFGNGFLLHVGPFQPGFKVLFKELKKAFMDQPITLSVNKMGWAFDQLRGFCFLFAVRSPPCRFPTLQDGNCFFLVLVVLLNSFFDLFCVTLPIDFCIGRFCDVSFLK
RAQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRSLFFRCTMRSEGTGAALSSGSEFGAIYYHASAELYHGLVHSSIHVDERSLHNSRENPVGKKDKKQTELSYAW
IKCLDWKVGPFQPGLKVLFKELKIGLYGSAHYIVRQQNGLGFQSCWGCLEPRRAALFFRSS