; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G012690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G012690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor TFIID subunit 10
Genome locationchr08:21113506..21116696
RNA-Seq ExpressionLsi08G012690
SyntenyLsi08G012690
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0016573 - histone acetylation (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:1990841 - promoter-specific chromatin binding (molecular function)
InterPro domainsIPR003923 - Transcription initiation factor TFIID, 23-30kDa subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598532.1 Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6386.54Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

XP_004138687.1 transcription initiation factor TFIID subunit 10 [Cucumis sativus]2.7e-6385.9Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

XP_008445293.1 PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo]5.5e-6487.18Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

XP_022962589.1 transcription initiation factor TFIID subunit 10 [Cucurbita moschata]1.2e-6386.54Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

XP_038886703.1 transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida]5.5e-6487.18Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

TrEMBL top hitse value%identityAlignment
A0A0A0LPV6 Transcription initiation factor TFIID subunit 101.3e-6385.9Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

A0A1S3BD75 Transcription initiation factor TFIID subunit 102.7e-6487.18Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

A0A6J1BVJ5 Transcription initiation factor TFIID subunit 102.1e-6183.33Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKHQEYFADSPSTGVD TSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

A0A6J1HHI7 Transcription initiation factor TFIID subunit 106.0e-6486.54Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

A0A6J1KB50 Transcription initiation factor TFIID subunit 106.0e-6486.54Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        M+DLSKALRE                    YGVNVKHQEYFADSPSTGVDSTSREE
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

SwissProt top hitse value%identityAlignment
O04173 Transcription initiation factor TFIID subunit 102.4e-5473.08Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+D  +R+E
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

Q12962 Transcription initiation factor TFIID subunit 102.5e-1941.94Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKS
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  A    +   + KD++  LTMEDL+ AL E       
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKS

Query:  LMCMFSHFMPKYFYGVNVKHQEYF
                     YG+NVK   YF
Subjt:  LMCMFSHFMPKYFYGVNVKHQEYF

Q8K0H5 Transcription initiation factor TFIID subunit 102.5e-1941.94Show/hide
Query:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKS
        L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK +  A    +   + KD++  LTMEDL+ AL E       
Subjt:  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREFPLGGKS

Query:  LMCMFSHFMPKYFYGVNVKHQEYF
                     YG+NVK   YF
Subjt:  LMCMFSHFMPKYFYGVNVKHQEYF

Q9U5W9 Transcription initiation factor TFIID subunit 104.9e-1540.78Show/hide
Query:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAV------VKDKRDKQQKDKRLILTMEDLSKA
        +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DALQHCK R   +         K  K  KD++  L MEDL  A
Subjt:  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAV------VKDKRDKQQKDKRLILTMEDLSKA

Query:  LRE
        L +
Subjt:  LRE

Q9XZT7 Transcription initiation factor TFIID subunit 10b2.6e-1639.32Show/hide
Query:  NHSQQATG------SRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKD
        +H Q + G       R    + LS+F++ L +YTP IPD +  HYL   GFQ  D R++RL+++A QK+++D+  DALQH KAR            + KD
Subjt:  NHSQQATG------SRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKD

Query:  KRLILTMEDLSKALREF
        ++  LTMEDL  AL ++
Subjt:  KRLILTMEDLSKALREF

Arabidopsis top hitse value%identityAlignment
AT4G31720.1 TBP-associated factor II 151.7e-5573.08Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+D  +R+E
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE

AT4G31720.2 TBP-associated factor II 151.7e-5573.08Show/hide
Query:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT
        MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LT
Subjt:  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILT

Query:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE
        MEDLSKALRE                    YGVNVKH EYFADSPSTG+D  +R+E
Subjt:  MEDLSKALREFPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCATAGCCAACAGGCGACAGGGAGCAGGCACGACGATGATGCAGCGCTCTCCGAGTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGT
GGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCGAGTGATGCTCTCC
AGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAG
TTTCCACTCGGCGGGAAATCTTTAATGTGCATGTTTTCTCATTTTATGCCCAAATACTTTTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAAC
GGGAGTGGATTCTACTTCCAGAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
GGAGCAATTTAAACGAGCTTGATTACGAAGAGAGGGAAAACGAAGAAGAAGATGAACCATAGCCAACAGGCGACAGGGAGCAGGCACGACGATGATGCAGCGCTCTCCGA
GTTTCTAGCATCGCTAATGGAGTATACTCCCACTATTCCCGATGAGTTGGTGGAGCATTACTTAGGGAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTG
TTGCTGTTGCCACGCAGAAGTTCGTTGCAGATGTTGCGAGTGATGCTCTCCAGCATTGTAAGGCAAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAG
GATAAGCGCTTAATATTGACCATGGAGGATCTCTCGAAGGCACTTCGTGAGTTTCCACTCGGCGGGAAATCTTTAATGTGCATGTTTTCTCATTTTATGCCCAAATACTT
TTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACGGGAGTGGATTCTACTTCCAGAGAGGAATGA
Protein sequenceShow/hide protein sequence
MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALRE
FPLGGKSLMCMFSHFMPKYFYGVNVKHQEYFADSPSTGVDSTSREE