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Lsi08G013220 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013220
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr08:21553830..21554042
RNA-Seq ExpressionLsi08G013220
SyntenyLsi08G013220
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR032867 - DYW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065167.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.0e-2688.06Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

XP_004152758.1 pentatricopeptide repeat-containing protein At1g25360 [Cucumis sativus]1.0e-2586.57Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKK+GYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

XP_016899981.1 PREDICTED: pentatricopeptide repeat-containing protein At1g25360-like [Cucumis melo]6.0e-2688.06Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

XP_022144208.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]3.2e-2791.04Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAVGFGLMKLP+GATV+VFKNLRI GDCHNAFKFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

XP_038886633.1 pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida]2.4e-2791.04Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAVGFGLMKLP+GATV+VFKNLRI GDCHNAFKFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

TrEMBL top hitse value%identityAlignment
A0A0A0LL72 DYW_deaminase domain-containing protein4.9e-2686.57Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKK+GYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

A0A1S4DVG9 pentatricopeptide repeat-containing protein At1g25360-like2.9e-2688.06Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

A0A5A7VDN1 Pentatricopeptide repeat-containing protein2.9e-2688.06Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAV FGLMKLP+GATV+VFKNLRI GDCHNA KFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

A0A6J1CRF6 pentatricopeptide repeat-containing protein At1g25360-like1.5e-2791.04Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKKLGYIPDTKYVL DM+SEHKEYALSTH+EKLAVGFGLMKLP+GATV+VFKNLRI GDCHNAFKFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

A0A6J1KSZ4 pentatricopeptide repeat-containing protein At1g25360-like6.4e-2685.07Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MKK GY+PDTKYVL DM+SEHKEYAL+TH+E+LAVGFGLMKLP GATV+VFKNLRI GDCHNAFKFM
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

SwissProt top hitse value%identityAlignment
O81767 Pentatricopeptide repeat-containing protein At4g339902.9e-1546.27Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        +K +GY+PD ++VLQD++ + KE+ L +H+E+LA+ F L+  P   T+++FKNLR+ GDCH+  KF+
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

P0C7R1 Pentatricopeptide repeat-containing protein DWY1, chloroplastic9.9e-1652.24Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        ++  GY+P+TKYVL D+  E KE AL  H+E+LA+ FG++  P G T++V KNLRI GDCHN  K +
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

Q8S9M4 Pentatricopeptide repeat-containing protein At2g410803.8e-1558.21Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MK  GY PDT  VL DM  E KE  L  H+EKLAV F LM LPEGA +++ KNLR+  DCH AFK++
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

Q9FRI5 Pentatricopeptide repeat-containing protein At1g253601.7e-2061.97Show/hide
Query:  MKKLGYIPDTKYVLQDMKSE-HKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFMLTW
        M++LGY+PDT +VL D++S+ HKE  L+TH+EK+AV FGLMKLP G T+++FKNLR  GDCHN F+F L+W
Subjt:  MKKLGYIPDTKYVLQDMKSE-HKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFMLTW

Q9ZUW3 Pentatricopeptide repeat-containing protein At2g276101.7e-1552.24Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        +K LGY PDT YVLQD+  EHKE  L+ H+E+LA+ FGL+  P+G+ + + KNLR+ GDCH   K +
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

Arabidopsis top hitse value%identityAlignment
AT1G25360.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-2161.97Show/hide
Query:  MKKLGYIPDTKYVLQDMKSE-HKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFMLTW
        M++LGY+PDT +VL D++S+ HKE  L+TH+EK+AV FGLMKLP G T+++FKNLR  GDCHN F+F L+W
Subjt:  MKKLGYIPDTKYVLQDMKSE-HKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFMLTW

AT1G47580.1 Pentatricopeptide repeat (PPR) superfamily protein7.0e-1752.24Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        ++  GY+P+TKYVL D+  E KE AL  H+E+LA+ FG++  P G T++V KNLRI GDCHN  K +
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-1652.24Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        +K LGY PDT YVLQD+  EHKE  L+ H+E+LA+ FGL+  P+G+ + + KNLR+ GDCH   K +
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

AT2G41080.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.7e-1658.21Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        MK  GY PDT  VL DM  E KE  L  H+EKLAV F LM LPEGA +++ KNLR+  DCH AFK++
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM

AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1646.27Show/hide
Query:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM
        +K +GY+PD ++VLQD++ + KE+ L +H+E+LA+ F L+  P   T+++FKNLR+ GDCH+  KF+
Subjt:  MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAATTAGGATATATTCCAGACACAAAGTATGTGCTACAAGATATGAAATCTGAACATAAAGAATATGCCTTATCTACTCACAATGAGAAGCTTGCAGTTGGGTT
TGGGCTAATGAAGCTCCCTGAAGGTGCCACTGTCAAGGTTTTCAAGAACCTTCGGATACGTGGAGATTGTCACAATGCATTCAAGTTCATGCTCACGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAATTAGGATATATTCCAGACACAAAGTATGTGCTACAAGATATGAAATCTGAACATAAAGAATATGCCTTATCTACTCACAATGAGAAGCTTGCAGTTGGGTT
TGGGCTAATGAAGCTCCCTGAAGGTGCCACTGTCAAGGTTTTCAAGAACCTTCGGATACGTGGAGATTGTCACAATGCATTCAAGTTCATGCTCACGTGGTAA
Protein sequenceShow/hide protein sequence
MKKLGYIPDTKYVLQDMKSEHKEYALSTHNEKLAVGFGLMKLPEGATVKVFKNLRIRGDCHNAFKFMLTW