; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G013250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGibberellin-regulated protein 2
Genome locationchr08:21566057..21567220
RNA-Seq ExpressionLsi08G013250
SyntenyLsi08G013250
Gene Ontology termsGO:0050896 - response to stimulus (biological process)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444802.1 PREDICTED: snakin-2-like [Cucumis melo]4.3e-4287.63Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MSI +KAL ASL LSLLFLH VES+GVGL+P SPQKMDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_022951559.1 snakin-2-like [Cucurbita moschata]3.3e-4285.57Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_023002563.1 snakin-2-like [Cucurbita maxima]1.9e-4286.6Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886088.1 snakin-2-like isoform X1 [Benincasa hispida]1.7e-4694.95Show/hide
Query:  MSIFSKALIASLFLSLLFLHS--VESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MS FSKALIASLFLSLLFLHS  VESNGVGLIPPSPQKMDCGGACAGRCRLSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHS--VESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886089.1 snakin-2-like isoform X2 [Benincasa hispida]5.2e-4896.91Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MS FSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSR RLCNRACGTCC+RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LNS5 Uncharacterized protein1.3e-4184.54Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M I +K L ASL LSLLFLH VESNGVGL+PP+P++MDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A1S3BBY7 snakin-2-like2.1e-4287.63Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MSI +KAL ASL LSLLFLH VES+GVGL+P SPQKMDC GAC  RC LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1CRW3 snakin-2-like3.8e-3674.31Show/hide
Query:  MSIFSKALIAS--LFLSLLFLHS---------VES-NGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT
        MS+FSK LI +  L  SLLFLH+         VES +  G+ P +P KMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT
Subjt:  MSIFSKALIAS--LFLSLLFLHS---------VES-NGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMT

Query:  THGGRLKCP
        THGGR KCP
Subjt:  THGGRLKCP

A0A6J1GJ50 snakin-2-like1.6e-4285.57Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1KTY1 snakin-2-like9.3e-4386.6Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I SKALIASL LSLLFLHSVES G  ++ PSPQKMDCGGACA RCRLSSRPRLC+RACGTCCQRCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 111.9e-2457.73Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M++F + L+ASL +SLL L  V ++ V        K+DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46687 Gibberellin-regulated protein 32.0e-2657.84Show/hide
Query:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        M+IF   L+  L L       L +H+ E + VG       K+DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLK
Subjt:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

P46688 Gibberellin-regulated protein 24.2e-2453.92Show/hide
Query:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        M++F   L+  L +       L +H+ +   VG       K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLK
Subjt:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

P46689 Gibberellin-regulated protein 11.8e-2763.16Show/hide
Query:  SKALIASLFLSLLFLHSVESNGVGLIPPS--PQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        SKALIASL +SLL L  V+++       +   +K+DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  SKALIASLFLSLLFLHSVESNGVGLIPPS--PQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

Q93X17 Snakin-22.1e-3166.34Show/hide
Query:  SKALIASLFLSLLFLHSVE--------SNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC
        SKAL ASL LSLL L  V+        SN +     S +K+DCGGACA RCRLSSRPRLCNRACGTCC RCNCVPPGTSGN   CPCYA++TTHG + KC
Subjt:  SKALIASLFLSLLFLHSVE--------SNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKC

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 11.3e-2863.16Show/hide
Query:  SKALIASLFLSLLFLHSVESNGVGLIPPS--PQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        SKALIASL +SLL L  V+++       +   +K+DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  SKALIASLFLSLLFLHSVESNGVGLIPPS--PQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT1G75750.2 GAST1 protein homolog 11.3e-2862Show/hide
Query:  SKALIASLFLSLLFLHSVES-------NGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        SKALIASL +SLL L  V++       NG        +K+DCG AC  RCRLS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  SKALIASLFLSLLFLHSVES-------NGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT2G18420.1 Gibberellin-regulated family protein1.3e-2557.73Show/hide
Query:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M++F + L+ASL +SLL L  V ++ V        K+DC   C  RC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  MSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT4G09600.1 GAST1 protein homolog 31.4e-2757.84Show/hide
Query:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        M+IF   L+  L L       L +H+ E + VG       K+DCGG C GRC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLK
Subjt:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP

AT4G09610.1 GAST1 protein homolog 23.0e-2553.92Show/hide
Query:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK
        M++F   L+  L +       L +H+ +   VG       K+DCGG C  RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLK
Subjt:  MSIFSKALIASLFLSL-----LFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLK

Query:  CP
        CP
Subjt:  CP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCAAATTCCATTTCTCCATTGCATTGCATTATATCCTGCCCCAGTTCCCACCCACTGATCCTCTGTTCGCTGAACCACAAAGCCTAGCTTTTGCTATAAAAATGATCTC
TCCAAGGATTATTCCATCCAATTCAAAATCCCTAAAAACCATGTCCATCTTCTCCAAAGCTCTCATTGCTTCCCTCTTCCTCTCTCTGCTTTTCCTCCACTCTGTGGAAT
CCAACGGCGTGGGTTTAATCCCCCCAAGTCCTCAGAAAATGGACTGTGGCGGCGCGTGTGCTGGGAGGTGCAGGCTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGT
GGAACATGCTGTCAGCGCTGCAACTGCGTTCCGCCGGGGACTTCCGGCAACCACCATCTCTGCCCCTGCTACGCTGCCATGACCACCCACGGCGGCCGCCTCAAGTGCCC
TTGA
mRNA sequenceShow/hide mRNA sequence
CTCAAATTCCATTTCTCCATTGCATTGCATTATATCCTGCCCCAGTTCCCACCCACTGATCCTCTGTTCGCTGAACCACAAAGCCTAGCTTTTGCTATAAAAATGATCTC
TCCAAGGATTATTCCATCCAATTCAAAATCCCTAAAAACCATGTCCATCTTCTCCAAAGCTCTCATTGCTTCCCTCTTCCTCTCTCTGCTTTTCCTCCACTCTGTGGAAT
CCAACGGCGTGGGTTTAATCCCCCCAAGTCCTCAGAAAATGGACTGTGGCGGCGCGTGTGCTGGGAGGTGCAGGCTGTCGTCGAGGCCGAGGCTGTGCAATAGAGCGTGT
GGAACATGCTGTCAGCGCTGCAACTGCGTTCCGCCGGGGACTTCCGGCAACCACCATCTCTGCCCCTGCTACGCTGCCATGACCACCCACGGCGGCCGCCTCAAGTGCCC
TTGAAGTAACCGTTGACCGTTGACCGCCTCAACCTATATATATGTATATATGCGCAAATTATCATAAACTCTGTTTTTCTTTGTGGTGTTTTCTTCTTTTCATGTACGCA
TAAAACTAATGGGCTATTTTGGTGTGTTTTTTTTCATTCTTATATTTTTCAATCTCTCTTTTGAAAATGATAGTAGGGAAGGTCACTTCATAATTTTAAAATTTCTTAAT
TAATCATTTAATATAACTTAAAATAGTATTTAAGCTTTTAAAACACCTTTTTTATGGGCATTGGAAGCAATTTCGTACCTAAATTATTGTACATATGTAGCAGTTCATGC
CTTGTTAATTTAATATTGGAGGAGGGATGTGTTTGTTTATCTAATAAGAAGTAATTTTTAAAGTATATTTCTCGACTATTTCATTTATTTAAAATATGGAATTGGAAAAC
AAAAATAAAATAATAATATGGGGTTTGGGGCATGGGAAAGGGAGTTTATACGTGGCATAAACAAAATTAATTCGAGGGATGGTTGGTGCCACCCACCACCTGGTTCCTAC
AAGTGTG
Protein sequenceShow/hide protein sequence
LKFHFSIALHYILPQFPPTDPLFAEPQSLAFAIKMISPRIIPSNSKSLKTMSIFSKALIASLFLSLLFLHSVESNGVGLIPPSPQKMDCGGACAGRCRLSSRPRLCNRAC
GTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP