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Lsi08G013390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionXylanolytic transcriptional activator xlnR like
Genome locationchr08:21696024..21698885
RNA-Seq ExpressionLsi08G013390
SyntenyLsi08G013390
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039632 - Transmembrane protein 42


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598488.1 hypothetical protein SDJN03_08266, partial [Cucurbita argyrosperma subsp. sororia]5.8e-5088.89Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LI++
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LN+SSIEKKESKD
Subjt:  GVLVLNKSSIEKKESKD

XP_022144157.1 uncharacterized protein LOC111013916 [Momordica charantia]3.4e-5091.45Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEGKKG  GYVWAISAGFNAA AAIAAKLFS TLIR GLVIAFNLAMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEE LSFQWFVGALLIVI
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LNKSSIEKKE+KD
Subjt:  GVLVLNKSSIEKKESKD

XP_022961823.1 uncharacterized protein LOC111462473 [Cucurbita moschata]4.4e-5089.74Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LN+SSIEKKESKD
Subjt:  GVLVLNKSSIEKKESKD

XP_022997366.1 uncharacterized protein LOC111492304 [Cucurbita maxima]4.4e-5089.74Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LN+SSIEKKESKD
Subjt:  GVLVLNKSSIEKKESKD

XP_038885716.1 multidrug resistance protein EbrB isoform X2 [Benincasa hispida]1.3e-4990.6Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEGKKGN GY WAI+AG NAAF+AIAAKLFSYTLIR+GLV+AFNLAMWGCYVNSLK LSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGALLIVI
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LNKSSI KKESKD
Subjt:  GVLVLNKSSIEKKESKD

TrEMBL top hitse value%identityAlignment
A0A0A0LPF1 Uncharacterized protein9.0e-4992.04Show/hide
Query:  KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLV
        +G+ GYVWAISAG NAAFAAIAAKLFSYTLIR+ LVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSF+WFVGALLIVIGVL+
Subjt:  KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLV

Query:  LNKSSIEKKESKD
        LNKSSIEKKESKD
Subjt:  LNKSSIEKKESKD

A0A1S3BB59 multidrug resistance protein EbrB4.5e-4889.38Show/hide
Query:  KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLV
        +G+ GYVWAISAG NAA +AIAAKLFSYT  R+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIVIGVL+
Subjt:  KGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLV

Query:  LNKSSIEKKESKD
        LNKSSIEKKESKD
Subjt:  LNKSSIEKKESKD

A0A6J1CSW2 uncharacterized protein LOC1110139161.6e-5091.45Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEGKKG  GYVWAISAGFNAA AAIAAKLFS TLIR GLVIAFNLAMWGC+VNSLKALSSLQATGTNFS NFLCSGLAGFFLFEE LSFQWFVGALLIVI
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LNKSSIEKKE+KD
Subjt:  GVLVLNKSSIEKKESKD

A0A6J1HCY1 uncharacterized protein LOC1114624732.2e-5089.74Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LN+SSIEKKESKD
Subjt:  GVLVLNKSSIEKKESKD

A0A6J1K7A2 uncharacterized protein LOC1114923042.2e-5089.74Show/hide
Query:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI
        MEG+KG  GY+WAISAG NAAFAAIAAKLFS TLIR+GLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEE LSFQWFVGA+LIV+
Subjt:  MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVI

Query:  GVLVLNKSSIEKKESKD
        GVL+LN+SSIEKKESKD
Subjt:  GVLVLNKSSIEKKESKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30845.1 unknown protein1.6e-3465.14Show/hide
Query:  GYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKS
        GY+ A++AG NAA AAI+AK F+  +I++GLV+  N+ MW CYVNSL+ALSSLQAT TNF+ANFL SGLAG FLF+E LSF+WF GAL I  GVL+L+KS
Subjt:  GYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKS

Query:  SIEKKESKD
        S++KK S D
Subjt:  SIEKKESKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGGAAGAAGGGGAATAATGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGCA
TGGGCTGGTGATTGCGTTCAACTTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGAACAAACTTTTCAGCTAACTTTCTTT
GTTCTGGTCTAGCCGGTTTCTTTTTGTTCGAAGAAGAATTATCATTTCAGTGGTTTGTAGGTGCCTTATTGATTGTAATTGGCGTGTTGGTTTTGAATAAGTCGAGCATT
GAGAAGAAAGAAAGCAAGGACTGA
mRNA sequenceShow/hide mRNA sequence
GTGAACTTCAAGTGGAGGGAACAAATACTCCCTTAAAAACTATTTTGAGAAAATATATTTTAAAAAATTCAAAAACTAAACCGGTTAGACCAACCACGACCGGTCCAAAC
CGGTTCGCTAGCGAAGGAGGCTTTCGTCGTCTCGCCCAAAGTTCACAAGAAAATAACAACCGAAATAGGATAATTTTTTACTCTGTAAATGGAAGGGAAGAAGGGGAATA
ATGGTTACGTGTGGGCAATTTCAGCCGGTTTCAACGCTGCTTTTGCCGCCATTGCCGCCAAGCTTTTCTCCTATACGTTAATTAGGCATGGGCTGGTGATTGCGTTCAAC
TTGGCAATGTGGGGATGTTATGTCAATAGCTTAAAAGCTCTCTCCTCATTACAAGCTACAGGAACAAACTTTTCAGCTAACTTTCTTTGTTCTGGTCTAGCCGGTTTCTT
TTTGTTCGAAGAAGAATTATCATTTCAGTGGTTTGTAGGTGCCTTATTGATTGTAATTGGCGTGTTGGTTTTGAATAAGTCGAGCATTGAGAAGAAAGAAAGCAAGGACT
GAACTTTGCTCTTAGTTTATCATCAATCATTTCATCATGTAGCCTCCTTGCCTTCGAACATGAAAGAATTCTCTGGTTCTTGAAAGAAGTGGGAGATCAATTTGCAATGT
GTATGAAATCGAGCTGTTCGAAATTATAGCTGGGCAGCTCCATCAACGGCGGACATTGTTCTCGACATGCAGGTAGAATAACCAGGTAGTTTCTTATGGTGTTAGCAAAT
GAGATGTGAATTAAAGAAGTATCTATCTGCTCAAGTTTTCTCAGTTTAGAATTTAGAATTGCTCACGTTCTGTTTGCTAAGGAATGCTCTTCATTTTTCTTCCCAAATAT
TTATCTACTTGTAGGAATGCATTTGATAATGGTTTGGTCTCATTTTTTCTATCTTC
Protein sequenceShow/hide protein sequence
MEGKKGNNGYVWAISAGFNAAFAAIAAKLFSYTLIRHGLVIAFNLAMWGCYVNSLKALSSLQATGTNFSANFLCSGLAGFFLFEEELSFQWFVGALLIVIGVLVLNKSSI
EKKESKD