; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G013540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationchr08:21847282..21854268
RNA-Seq ExpressionLsi08G013540
SyntenyLsi08G013540
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]7.4e-11482.66Show/hide
Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG
        MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE 
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG

Query:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
                   ++ K+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
Subjt:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR

Query:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]2.0e-11482.66Show/hide
Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE 
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG

Query:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
                   ++ K+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
Subjt:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR

Query:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_022951326.1 transcription initiation factor IIF subunit beta [Cucurbita moschata]3.3e-11481.48Show/hide
Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE  
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA

Query:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
                  ++ KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRD
Subjt:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD

Query:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGG+
Subjt:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]1.5e-11481.85Show/hide
Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE  
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA

Query:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
                  ++ KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRD
Subjt:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD

Query:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]1.2e-11683.7Show/hide
Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE  
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA

Query:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
                  ++ KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
Subjt:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD

Query:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

TrEMBL top hitse value%identityAlignment
A0A0A0LRL0 Transcription initiation factor IIF subunit beta3.6e-11482.66Show/hide
Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG
        MEDE G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE 
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG

Query:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
                   ++ K+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
Subjt:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR

Query:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta9.5e-11582.66Show/hide
Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE 
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG

Query:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
                   ++ K+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
Subjt:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR

Query:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta9.5e-11582.66Show/hide
Query:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG
        MED+ G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE 
Subjt:  MEDEQG-GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEG

Query:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
                   ++ K+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR
Subjt:  AASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRR

Query:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  DRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1GH97 Transcription initiation factor IIF subunit beta1.6e-11481.48Show/hide
Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE  
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA

Query:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
                  ++ KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRD
Subjt:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD

Query:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGG+
Subjt:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta7.3e-11581.85Show/hide
Query:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA
        MEDE GGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQ  +         +P    L+   D   +   SE  
Subjt:  MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSL---------MPTEKDLDKISDKQKLAEISEGA

Query:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD
                  ++ KMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRD
Subjt:  ASIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRD

Query:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  RGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

SwissProt top hitse value%identityAlignment
O94424 Transcription initiation factor IIF subunit beta2.5e-1930.65Show/hide
Query:  EDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISDKQKLAEISEGAASIFNYLSVQ
        ED++    + +LD G+    VWL+K P  +   W + P  D   L  V +  D +Q      L L   P   D+ KI + + + +         +Y+  +
Subjt:  EDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISDKQKLAEISEGAASIFNYLSVQ

Query:  AESKMSME-----GKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGEL
        +E+  SM+     G V H+ ++ P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S ST+   + V P     +K +R  R EL
Subjt:  AESKMSME-----GKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGEL

Query:  EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE
         DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++
Subjt:  EDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE

P41900 General transcription factor IIF subunit 21.1e-1627.03Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLD---KISDKQKL--AEISEGAASIFNYLSVQ-----
        +LD   A R VWL+K P  +A+ W+  P +  + + K+ ++  P    + + + LSL P    LD   KI  +  L  +++++    +F++++       
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLD---KISDKQKL--AEISEGAASIFNYLSVQ-----

Query:  --------AESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRG
                   K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +E+KK      ++ K+ R D+ 
Subjt:  --------AESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRG

Query:  ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
         + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 21.3e-1228.57Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISD-KQKLAEISEGAASIFNYLSV----------
        +L   K +  VWL+K P  +++ W   P      + K+ ++ +  +++ S +L        +DL  I D   K A +S      F   SV          
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISD-KQKLAEISEGAASIFNYLSV----------

Query:  QAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMF
         +  K+S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D KR R D+  + D++F
Subjt:  QAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMF

Query:  KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
          FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q03123 General transcription factor IIF subunit 22.6e-1325.76Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQ-----SDESSSLQ-------LSLMPTEKD---LDKISDKQKLAEISEGAASIFN
        +L+  K +  +WL+K P  +A+ W        +   +++ +    +     ++E +S+Q        SL+ T ++   L +    Q L  ++E       
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQ-----SDESSSLQ-------LSLMPTEKD---LDKISDKQKLAEISEGAASIFN

Query:  YLSVQAE--------SKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRT
         LS Q+E         K+++EG V H+ + +P +   + Y ++ R++  +S    RQ Q ++     + +P+        S  +   +    K+ D KR 
Subjt:  YLSVQAE--------SKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRT

Query:  RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
        R D+ ++ D++F  FE+   + +K LV  T QP  +LKEIL ++ +YN +GT++ T+ELKPEY+
Subjt:  RRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 21.3e-1228.17Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISD-KQKLAEISEGAASIFNYLSV----------
        +L   K +  VWL+K P  +++ W   P      + K+ ++ +  +++ S +L        +DL  I D   K A +S      F   SV          
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISD-KQKLAEISEGAASIFNYLSV----------

Query:  QAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMF
         +  K+S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F
Subjt:  QAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMF

Query:  KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
          FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Subjt:  KLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit5.7e-8058.89Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQLSL-------MPTEKDLDKISDKQKL---AEISEGAA
        NLD  K+DRS+WLMKCP++V K+W     S          P  +AK++  +DPL+ D     ++ +       MP    L+  +D   +   +++++G A
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPS---------DPLPLAKVILSLDPLQSDESSSLQLSL-------MPTEKDLDKISDKQKL---AEISEGAA

Query:  SIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR
                      + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDR
Subjt:  SIFNYLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR

Query:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE
        GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTGG+
Subjt:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit3.1e-6552.87Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPL-QSDESSSLQLSL-------MPTEKDLDKISDKQKLAEISEGAASIFN
        L+TG A+RS+ LMK P LVA S Q+H        P DP  P AKVIL +DPL   DE +   + L       MP    LD   D   +           N
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAHP-------PSDPL-PLAKVILSLDPL-QSDESSSLQLSL-------MPTEKDLDKISDKQKLAEISEGAASIFN

Query:  YLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELE
             ++ KMS+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++KRTRRDR E+E
Subjt:  YLSVQAESKMSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELE

Query:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED
        ++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Subjt:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAGCAGGGCGGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCTTTGTTAGTCGCTAAGTCATGGCAGGC
TCATCCTCCATCTGATCCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTGTCGTTGATGCCAACTGAGAAGG
ATTTGGATAAAATAAGTGACAAACAGAAGCTTGCTGAAATAAGTGAAGGAGCTGCCTCCATTTTCAACTACCTCTCTGTTCAAGCTGAAAGCAAGATGTCAATGGAAGGG
AAAGTGGAACATAAATTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCA
AGTGATAGACAATGACCGTGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAG
ATGTGAAAAGAACTAGAAGAGATCGCGGGGAACTAGAAGATATAATGTTCAAGCTGTTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACCGATCAA
CCTGCACAATTCTTGAAAGAGATATTGAATGAACTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAAGA
TACCGGCGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
AATCAGTGTCTCGATCAGAAAAAAGTCAAAATTGGATAGATAGATGAGAGACACTTGTTTGAGAATCCAGATTACATCAGTTGTACGATAACCTTCTCTGTATTGATTGC
GTAATATCAAAGCTCCTCCTGACTTCCGACCACCGCCTTCCGGTTCTTTAGGGTCCACTGCCGTCCGTGGACTTTTACGCCACCGTCGTCTCCAAGAAAGAAAAGAATAA
AAAAGAACAGAGTTGCAGAAAATCCGCCGTCAAAAGTTCAGACCAGAGTGTGAGAGAGAGAGAGAGAGAGGGTGATTTGTAATCTAATAGATATGGAAGATGAGCAGGGC
GGCGGTAGTAGTAGTAACTTGGATACAGGAAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCTTTGTTAGTCGCTAAGTCATGGCAGGCTCATCCTCCATCTGATCC
TCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTGTCGTTGATGCCAACTGAGAAGGATTTGGATAAAATAAGTG
ACAAACAGAAGCTTGCTGAAATAAGTGAAGGAGCTGCCTCCATTTTCAACTACCTCTCTGTTCAAGCTGAAAGCAAGATGTCAATGGAAGGGAAAGTGGAACATAAATTT
GATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCG
TGGAGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGATGTGAAAAGAACTAGAA
GAGATCGCGGGGAACTAGAAGATATAATGTTCAAGCTGTTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACCGATCAACCTGCACAATTCTTGAAA
GAGATATTGAATGAACTTTGTGTCTACAACAAAAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAAGATACCGGCGGAGAGTAGGT
TAGTTTTTGACTTGTATAATTTCATAGATTCCCTTTTCTTGGGGTGAGTGGAAACGATCAGGAATAAATCTGCTAATTAAGAGGGGAAGAAATATTTTGCTTTTGATATA
TTTTCATGGGATCGGTGAGATGGGAGGATGAAAGAAGTTGGTTTAAAATAATTGCTAGGTAGCTTTATACTAAAGTGAAACCAAAGGAGAAATGAAAGTTGGGGCGGAGT
TTTTATGGCATGTTCATCCAATTACGTACGAGTTGGTCGGAAGTTGCAAGATGAATCTATATAATGTATTTTATGAGCATGTGAAGATGATGGAAAACAGATTTCACAAA
CTTGATTATTCATTGACTTTTATTTTGCATAGTGTTTTTCCAATTACTAGTCAAGGAAATTGTTTTTGTCGTGCCTTTTGCAGTGGCGAGAGGAATCTGTCTTTGATTAT
CTCATATGCACTTGTCTGGGATATTTAGGGTGAGTGAGTTAGATTGTTGATCACACCAAAAATAAAGAATTAACCACATGGGTTGGTCTAGTGGTCGATAACTATTAACG
TAAATAGGAAGAGATTAATAGGGAATGAATTCTTTAATGGTGGCTACATACTTTGGATTTAATATCTAATGAGTTACGTTGGTAATCAAATGTAGATAAGACGATTTTAT
TGTGAGAATAGGAATTCACAGCTATTGAAAAACAATGGTTTTGATGGAAATTGTGTAGCATTTTAATGTTTTAGCTGAATTCACAGCTATTGCAAAACAG
Protein sequenceShow/hide protein sequence
MEDEQGGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSDESSSLQLSLMPTEKDLDKISDKQKLAEISEGAASIFNYLSVQAESKMSMEG
KVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQ
PAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE