; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G013690 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013690
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTLC domain-containing protein
Genome locationchr08:21978120..21980859
RNA-Seq ExpressionLsi08G013690
SyntenyLsi08G013690
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006634 - TRAM/LAG1/CLN8 homology domain
IPR042512 - TLC domain-containing protein 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598466.1 TLC domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia]2.3e-6662.23Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA
        KKV++DN IHHLV IVGIAAGFAYQK                                             IF          LTY  +  T      KA
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

KAG7029404.1 Transmembrane protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-6662.66Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA
        KKV++DN IHHLV IVGIAAGFAYQK                                             IF          LTY  +  T      KA
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_008444752.1 PREDICTED: transmembrane protein 136 [Cucumis melo]3.9e-6663.09Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHF
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF

Query:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA
        DKKVSLDNTIHHLVSIVGIAAGFAYQK                                             IF          LTY  +  ++    KA
Subjt:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_022961950.1 transmembrane protein 56-B-like [Cucurbita moschata]3.9e-6661.37Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISV+NWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQKI----------------FILLTYYIIDITDNA----------------------------------------KA
        KKV++DN IHHLV IVGIAAGFAYQK                 F+ L   + +I D                                          KA
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQKI----------------FILLTYYIIDITDNA----------------------------------------KA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

XP_038886579.1 TLC domain-containing protein 5-like [Benincasa hispida]1.0e-6966.81Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VSDSRD  V NIVV GVISWTLGFI LRKLLPNRSFEFCNRLIST+HACLAVTLASISV+NWRCPICPLAS+SSPFQMQTLAVSCSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFI--------LLTYYIIDITDN--AKAM
        KKVSLDNTIHHLVSIVGIAAGFAYQK                                             IF          LTY  +  T     KAM
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFI--------LLTYYIIDITDN--AKAM

Query:  ALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        ALGLQLVSAYWFYKIVRMVRFKLNNR TLKN+
Subjt:  ALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

TrEMBL top hitse value%identityAlignment
A0A0A0LLI2 TLC domain-containing protein5.5e-6663.52Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF
        MEVS+SRD DV N++V GVISWTLGFI LRK + PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQMQTL+VSCSYLIYD+VCCHF
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRK-LLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF

Query:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA
        DKKVSLDNTIHHLVSIVGIAAG AYQK                                             IF          LTY  +  ++    KA
Subjt:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKLNNRSTLK +
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A1S3BB19 transmembrane protein 1361.9e-6663.09Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHF
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF

Query:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA
        DKKVSLDNTIHHLVSIVGIAAGFAYQK                                             IF          LTY  +  ++    KA
Subjt:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A5A7VDR0 Transmembrane protein 1361.9e-6663.09Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF
        MEVS++RD D+ N+VV GVISWTLGF+ LRK++ PNRSFEFCNRLIST+HA LAVTLASISVQNWRCPICPLASKSS FQMQTL VSCSYLIYD+VCCHF
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLL-PNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHF

Query:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA
        DKKVSLDNTIHHLVSIVGIAAGFAYQK                                             IF          LTY  +  ++    KA
Subjt:  DKKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYII--DITDNAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRM+RFKL NRSTLKN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A6J1HDN8 transmembrane protein 56-B-like1.9e-6661.37Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VS  RD DV N+VVLGVI+WTL FI  RKLLPNRSFEFCNRL+STLHACLAVTLASISV+NWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQKI----------------FILLTYYIIDITDNA----------------------------------------KA
        KKV++DN IHHLV IVGIAAGFAYQK                 F+ L   + +I D                                          KA
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQKI----------------FILLTYYIIDITDNA----------------------------------------KA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLNNRST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

A0A6J1K2K3 transmembrane protein 136-like9.4e-6662.23Show/hide
Query:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD
        M VS  RD DV N+VVLGVI+WTL FI LRKLLP RSF FCNRL+STLHACLAVTLASISVQNWRCPICPLAS++SPFQMQTLAV+CSYLIYD+VCCHFD
Subjt:  MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFD

Query:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA
        KKV++DN IHHLVSIVGIAAGFAYQK                                             IF +        LTY  +  T      KA
Subjt:  KKVSLDNTIHHLVSIVGIAAGFAYQK---------------------------------------------IFIL--------LTYYIIDITD---NAKA

Query:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN
        MALGLQLVSAYWFYKIVRMVRFKLN+RST KN+
Subjt:  MALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G35170.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein6.5e-3539.53Show/hide
Query:  NIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHL
        +I  + +ISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP+AS SS  QM+TLA S SY+IYDL+C HFD+ +S+DN +HH 
Subjt:  NIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHL

Query:  VSIVGIAAGFAYQK----------------------------------------IFILLTY---------YIIDIT---DN---AKAMALGLQLVSAYWF
        V I+G  AG  YQK                                        +F    +         Y++ +T   DN    K M LGLQLVSA  F
Subjt:  VSIVGIAAGFAYQK----------------------------------------IFILLTY---------YIIDIT---DN---AKAMALGLQLVSAYWF

Query:  YKIVRMVRFKLNNRS
        YK+++M+R+K   RS
Subjt:  YKIVRMVRFKLNNRS

AT1G35180.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein1.8e-4042.86Show/hide
Query:  VKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIH
        V +I  +GVISW L FI +R++  + SF+F  R++STLHA +AVTLA++S+Q+W CP+CP+AS SS  QM+TLA S SY+IYDL+C HFD+ +S+DN +H
Subjt:  VKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIH

Query:  HLVSIVGIAAGFAYQK---------------------------------------------IFILLTY----YIIDITDNA------KAMALGLQLVSAY
        H V I+G  AG  YQK                                             IF L       Y++ +T +A      KAMALGLQLVSA+
Subjt:  HLVSIVGIAAGFAYQK---------------------------------------------IFILLTY----YIIDITDNA------KAMALGLQLVSAY

Query:  WFYKIVRMVRFKLNNRS
        WFYKI++M+R+K   RS
Subjt:  WFYKIVRMVRFKLNNRS

AT1G45010.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein4.8e-3842.86Show/hide
Query:  IVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLV
        I+V GVISW + FI  R++  + SF F NRL+ST HA +AVTLA++SVQ+  CP+CPLASK S  QM  +A S SY+IYDL+CCHFD+  S+DN +HH V
Subjt:  IVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIHHLV

Query:  SIVGIAAGFAYQK--IFILLTYYIIDIT--------------------------------------------------DN---AKAMALGLQLVSAYWFY
        SI+G  AG AYQK    I+ T ++ +I+                                                  DN    KAM  GLQLVS +WFY
Subjt:  SIVGIAAGFAYQK--IFILLTYYIIDIT--------------------------------------------------DN---AKAMALGLQLVSAYWFY

Query:  KIVRMVRFKL
        KI  M+R+KL
Subjt:  KIVRMVRFKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACATTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATC
TTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTCTGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGA
AATCCTCACCCTTTCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTTGCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCAT
CACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGATATTTATCTTGTTGACATACTACATTATCGATATAACTGACAATGCTAAAGCCATGGCTCT
GGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAACAGATCTACATTGAAGAACAATTAA
mRNA sequenceShow/hide mRNA sequence
CGGTCCTAGTTGCACCAATGAAAAACCCAACCAACCTATTCTTTAGAGGAAAAAAAGAAAAGCTTCATTATACAAAGTAGTAGTTTTCTCTGATCTTTCCACAAGACTCG
GCTTCTTCTTCTGCAAAAGGTGTGCTTTTGTTAGAGCTGCCATGGAAGTTTCAGACAGTCGAGATCGGGACGTAAAAAACATCGTCGTTTTGGGGGTAATATCATGGACA
TTGGGTTTCATTTGCTTAAGAAAACTCCTTCCAAATCGATCTTTTGAGTTTTGCAATCGACTCATTTCCACACTCCATGCTTGTTTGGCTGTTACATTGGCTTCCATCTC
TGTTCAAAATTGGCGTTGTCCCATTTGTCCTCTTGCTTCGAAATCCTCACCCTTTCAGATGCAAACATTGGCTGTGAGCTGTTCTTATTTGATATATGATTTGGTGTGTT
GCCATTTTGACAAGAAAGTGAGTTTGGACAATACAATCCATCACTTGGTTAGCATTGTTGGAATTGCAGCAGGCTTTGCTTATCAAAAGATATTTATCTTGTTGACATAC
TACATTATCGATATAACTGACAATGCTAAAGCCATGGCTCTGGGATTGCAGCTTGTCAGTGCCTACTGGTTTTACAAGATCGTGAGAATGGTCAGATTCAAACTCAACAA
CAGATCTACATTGAAGAACAATTAATCTTAGCCAAGGAATTGTCAAAAAGATAGAATTCTAGCAATTTTATGATTCTTCAAATCCCATTTGTATCTTGGGAGCAGTGACA
TTCCAAACAAAAACAGTGCATAAACTTTGCAATGAATTGTGTATTCTGTAAACTGAGTAGCAGATGATCATGTTTGAGTAAATGAAAATCAAAATGAACCATTTCATCTT
CAGCTTTA
Protein sequenceShow/hide protein sequence
MEVSDSRDRDVKNIVVLGVISWTLGFICLRKLLPNRSFEFCNRLISTLHACLAVTLASISVQNWRCPICPLASKSSPFQMQTLAVSCSYLIYDLVCCHFDKKVSLDNTIH
HLVSIVGIAAGFAYQKIFILLTYYIIDITDNAKAMALGLQLVSAYWFYKIVRMVRFKLNNRSTLKNN