CuGenDBv2

Gene ID	Lsi08G013930
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Chloroplast thylakoid membrane
Genome location	chr08:22211698..22215651
RNA-Seq Expression	Lsi08G013930
Synteny	Lsi08G013930
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152696.1 uncharacterized protein LOC101216764 isoform X1 [Cucumis sativus]

3.5e-90

88.15

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRLISV AAV   SPPSQSPNND FQE Q   HQLPITTSRR LTMLSFISAVPSLFLPAPA+AF+IGI    +GPKDWLKEQKKKASKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  VYLLLSNDS+YS+KDMEDVQRLLKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNA+SLLGN+DPIKLEAESLLKDLVSSFTSLNSL 
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

XP_008444717.1 PREDICTED: uncharacterized protein LOC103487971 [Cucumis melo]

1.4e-91

88.63

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRL SVPAAV   SPPSQSPN+D FQESQ+  HQLPITTSRR LTMLSFISA+PSLFLPAPA+AF+IGI    +GPKDWLKEQKKK+SKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  VYLLLSNDS+YSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNA+SLLGNKDPIKLEAE+LLKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

XP_023545902.1 uncharacterized protein LOC111805195 isoform X1 [Cucurbita pepo subsp. pepo]

3.3e-85

83.41

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRLISVP+AVSP S  S  PNND   +SQ+  H LPITTSRR LTMLSF+SA+PSLFLPAPATAF+IGI    +GPKDWL+EQK+KAS+FLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASR SLH VYL+LSNDS+YSNKDMEDVQR+LKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNA+SLLGN+DPIKLEAES LKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

XP_038884855.1 uncharacterized protein LOC120075490 isoform X1 [Benincasa hispida]

9.7e-93

89.57

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRL  V AAVSPPSP SQ+PNND FQESQ P HQLPITTSRR LTMLSFISAVPSLFLPAPATAFNIGI    +GPKDWLKEQKKKASKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  V+LLLSNDS+YSNKDMEDV RLLKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFT LNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQV+SNR
Subjt:  YETDIQVNSNR

XP_038884856.1 uncharacterized protein LOC120075490 isoform X2 [Benincasa hispida]

9.7e-93

89.57

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRL  V AAVSPPSP SQ+PNND FQESQ P HQLPITTSRR LTMLSFISAVPSLFLPAPATAFNIGI    +GPKDWLKEQKKKASKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  V+LLLSNDS+YSNKDMEDV RLLKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFT LNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQV+SNR
Subjt:  YETDIQVNSNR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPA8 Uncharacterized protein

1.7e-90

88.15

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRLISV AAV   SPPSQSPNND FQE Q   HQLPITTSRR LTMLSFISAVPSLFLPAPA+AF+IGI    +GPKDWLKEQKKKASKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  VYLLLSNDS+YS+KDMEDVQRLLKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNA+SLLGN+DPIKLEAESLLKDLVSSFTSLNSL 
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

A0A1S3BAY8 uncharacterized protein LOC103487971

6.8e-92

88.63

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRL SVPAAV   SPPSQSPN+D FQESQ+  HQLPITTSRR LTMLSFISA+PSLFLPAPA+AF+IGI    +GPKDWLKEQKKK+SKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  VYLLLSNDS+YSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNA+SLLGNKDPIKLEAE+LLKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

A0A5A7VAP0 Chloroplast thylakoid membrane

6.8e-92

88.63

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRL SVPAAV   SPPSQSPN+D FQESQ+  HQLPITTSRR LTMLSFISA+PSLFLPAPA+AF+IGI    +GPKDWLKEQKKK+SKFLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSL  VYLLLSNDS+YSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNA+SLLGNKDPIKLEAE+LLKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

A0A6J1HBI9 uncharacterized protein LOC111462505 isoform X1

1.4e-84

82.46

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRLISVP+AVSP S  S  P +D   +SQ+  H LP+TTSRR LTMLSF+SA+PSLFLPAPATAF+IGI    +GPKDWL+EQKKKAS+FLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSLH VYL+LSN S+YSNKDMEDVQR+LKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNA+SLLGN+DPIKLEAES LKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

A0A6J1K9U3 uncharacterized protein LOC111492399 isoform X1

1.8e-84

82.94

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Query:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI
        MTTIGFRLISVP+AVSP S  S  P +D   +SQ+  H LPITTSRR LTMLSF+SA+PSLFLPAPATAF+IGI    +GPKDWL+EQKKKAS+FLLAPI
Subjt:  MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPI

Query:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA
        EASRDSLH VYL+LSN S+YSNKDMEDVQR+LKSAARDCVLKDR+SFVQFQASTGVEVCTFQLIVKNA+SLLGN+DPIKLEAES LKDLVSSFTSLNSLA
Subjt:  EASRDSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLA

Query:  YETDIQVNSNR
        YETDIQVNSNR
Subjt:  YETDIQVNSNR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G42765.1 INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

4.4e-43

50.72

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Query:  ISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPA----PATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPIEASR
        IS P   S   PP   P       +Q   H LP   SRR  T+L  +S+  SL L      PA AF++GI    +GPK+WLK+QKKK+S+FLLAPI+A+R
Subjt:  ISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPA----PATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPIEASR

Query:  DSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLAYETD
         +L   YL L+++S+Y+ KD+E++Q L KS+ARDCV K+RSS V FQ+ +GVEVCTF+L+VKNA+SLL +KDP+KLEAE++L DLV SF SL  L    D
Subjt:  DSLHIVYLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLAYETD

Query:  IQVNSNR
        + + S+R
Subjt:  IQVNSNR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAACGATTGGATTCCGCCTTATCTCGGTTCCTGCCGCCGTCTCTCCACCTTCTCCACCTTCTCAAAGTCCGAACAATGATTCATTCCAAGAAAGCCAATCGCCGGG
CCATCAACTTCCGATTACAACATCTCGCAGAAGCCTCACTATGCTCTCATTTATCTCTGCGGTGCCGTCTCTGTTTCTACCCGCTCCCGCCACTGCTTTCAATATCGGCA
TTTGTTTGTTTGCAGCAGGACCAAAGGATTGGCTGAAGGAGCAGAAGAAGAAGGCCTCCAAATTCCTCTTGGCACCAATTGAGGCCTCCAGAGACAGCCTTCACATAGTT
TACCTTTTGCTTTCCAACGATTCCAATTACTCAAATAAGGATATGGAGGACGTTCAAAGACTGCTTAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAGCTCGTT
TGTTCAATTCCAAGCGAGTACAGGAGTCGAGGTCTGTACATTTCAATTGATTGTGAAAAATGCATCATCCTTGCTTGGAAACAAAGATCCTATAAAACTAGAAGCTGAAA
GTCTATTAAAAGATCTAGTAAGCTCTTTCACATCTCTTAATAGTCTTGCCTATGAAACTGATATTCAAGTCAATTCCAATAGGTTTCTCAGGCATGCCTCTCCAGCTAGT
AACTCTGCTACACTTGCTTCGAAAGTGCTCTTCCTGTTCCTGCTGCCATTTGACACTTCAAGCATTCGAAGTAATCCGACATTCAGCCTCAATTCTAACATGGACTTCTC
GTACACTGTCGGCCAACAACGTATCTGGAAGCTTTAG

mRNA sequence

Show/hide mRNA sequence

TATTTGTTTAGAGGAAAAAAACAAAATATCCGTTCATTGCATAATCAATTCATAACTCAGAAGCATCCCTGTTCGCCACCATGACAACGATTGGATTCCGCCTTATCTCG
GTTCCTGCCGCCGTCTCTCCACCTTCTCCACCTTCTCAAAGTCCGAACAATGATTCATTCCAAGAAAGCCAATCGCCGGGCCATCAACTTCCGATTACAACATCTCGCAG
AAGCCTCACTATGCTCTCATTTATCTCTGCGGTGCCGTCTCTGTTTCTACCCGCTCCCGCCACTGCTTTCAATATCGGCATTTGTTTGTTTGCAGCAGGACCAAAGGATT
GGCTGAAGGAGCAGAAGAAGAAGGCCTCCAAATTCCTCTTGGCACCAATTGAGGCCTCCAGAGACAGCCTTCACATAGTTTACCTTTTGCTTTCCAACGATTCCAATTAC
TCAAATAAGGATATGGAGGACGTTCAAAGACTGCTTAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAGCTCGTTTGTTCAATTCCAAGCGAGTACAGGAGTCGA
GGTCTGTACATTTCAATTGATTGTGAAAAATGCATCATCCTTGCTTGGAAACAAAGATCCTATAAAACTAGAAGCTGAAAGTCTATTAAAAGATCTAGTAAGCTCTTTCA
CATCTCTTAATAGTCTTGCCTATGAAACTGATATTCAAGTCAATTCCAATAGGTTTCTCAGGCATGCCTCTCCAGCTAGTAACTCTGCTACACTTGCTTCGAAAGTGCTC
TTCCTGTTCCTGCTGCCATTTGACACTTCAAGCATTCGAAGTAATCCGACATTCAGCCTCAATTCTAACATGGACTTCTCGTACACTGTCGGCCAACAACGTATCTGGAA
GCTTTAG

Protein sequence

Show/hide protein sequence

MTTIGFRLISVPAAVSPPSPPSQSPNNDSFQESQSPGHQLPITTSRRSLTMLSFISAVPSLFLPAPATAFNIGICLFAAGPKDWLKEQKKKASKFLLAPIEASRDSLHIV
YLLLSNDSNYSNKDMEDVQRLLKSAARDCVLKDRSSFVQFQASTGVEVCTFQLIVKNASSLLGNKDPIKLEAESLLKDLVSSFTSLNSLAYETDIQVNSNRFLRHASPAS
NSATLASKVLFLFLLPFDTSSIRSNPTFSLNSNMDFSYTVGQQRIWKL

Lsi08G013930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome