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Lsi08G013940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB3 domain-containing protein At2g31420-like
Genome locationchr08:22217025..22217539
RNA-Seq ExpressionLsi08G013940
SyntenyLsi08G013940
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598443.1 B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.0e-1644.92Show/hide
Query:  GGKRRKRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQ--------KKKANE
        G    KRKN   DD+P+++ +RE+VFS+T+EMP++LR+RI  +GG D+Q+V QK+LQ+ D +++H +  IP +KL ++FAT+ E +        +++   
Subjt:  GGKRRKRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQ--------KKKANE

Query:  MEVLIIDSCLRESVISLR
        M+V IIDS LRESVI L+
Subjt:  MEVLIIDSCLRESVISLR

XP_022144152.1 B3 domain-containing protein At2g31420-like [Momordica charantia]1.3e-1847.48Show/hide
Query:  VGGKRRKRKNEAVDD----------------KPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKF
        +GG  RKRKN   +D                  KK  Q E+VFS+TIEMP+ LRDRI E+GGYDIQIVIQKRLQD D++ +H + SIPI+KL ++F T+ 
Subjt:  VGGKRRKRKNEAVDD----------------KPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKF

Query:  EEQ--------KKKANEMEVLIIDSCLRESVISLRKCMI
        E+Q        +   N +  LI+D CLRES I L+K  I
Subjt:  EEQ--------KKKANEMEVLIIDSCLRESVISLRKCMI

XP_022144153.1 uncharacterized protein LOC111013910 [Momordica charantia]3.2e-1745.26Show/hide
Query:  AVGGKRRKRKNEAVD-------------DKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE-
        +V  + RKRKN   +             +  KK    E+VFS+TIEMP+ LRDRI E+GGYDIQ VIQKRLQD D++ +H + SIPI+KL ++FAT+ E 
Subjt:  AVGGKRRKRKNEAVD-------------DKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE-

Query:  -------EQKKKANEMEVLIIDSCLRESVISLRKCMI
               E +K  + +  LI+D CLRES I ++K  I
Subjt:  -------EQKKKANEMEVLIIDSCLRESVISLRKCMI

XP_022997537.1 B3 domain-containing protein At1g05920-like [Cucurbita maxima]3.5e-1646.96Show/hide
Query:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQKKKANE----------MEV
        KRKN   DD+P+++ +RE+VFS+T+EMP++LR RI  +GG D+QIV+QK+LQ+ D +++H +  IP +KL + FAT+ E +     E          MEV
Subjt:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQKKKANE----------MEV

Query:  LIIDSCLRESVISLR
         IID+ LRESVI L+
Subjt:  LIIDSCLRESVISLR

XP_023546349.1 B3 domain-containing protein At1g05920-like [Cucurbita pepo subsp. pepo]4.6e-1645.22Show/hide
Query:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE----------EQKKKANEMEV
        KRKN   DD+PK++ +RE+VFS+T+EMP++LR+RI  +GG D+Q+V QK+LQ+ D +++H +  IP +KL ++FAT+ E           ++++   M+V
Subjt:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE----------EQKKKANEMEV

Query:  LIIDSCLRESVISLR
         IIDS LRE+VI L+
Subjt:  LIIDSCLRESVISLR

TrEMBL top hitse value%identityAlignment
A0A5A7VHB3 B3 domain-containing protein2.1e-1444Show/hide
Query:  KRRKRKNE-AVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQ---------KKKANE
        KR+K  N    D +PKKE ++++VFS TIEM + LRDRI E+ G+DIQ V QKRLQD D++++H +  IP +KL+++FA++ E+Q          K  N 
Subjt:  KRRKRKNE-AVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQ---------KKKANE

Query:  MEVLIIDSCLRESVISLRKCMIARN
        M VLIID  LR   I L+   + ++
Subjt:  MEVLIIDSCLRESVISLRKCMIARN

A0A6J1CSJ5 uncharacterized protein LOC1110139101.6e-1745.26Show/hide
Query:  AVGGKRRKRKNEAVD-------------DKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE-
        +V  + RKRKN   +             +  KK    E+VFS+TIEMP+ LRDRI E+GGYDIQ VIQKRLQD D++ +H + SIPI+KL ++FAT+ E 
Subjt:  AVGGKRRKRKNEAVD-------------DKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE-

Query:  -------EQKKKANEMEVLIIDSCLRESVISLRKCMI
               E +K  + +  LI+D CLRES I ++K  I
Subjt:  -------EQKKKANEMEVLIIDSCLRESVISLRKCMI

A0A6J1CSV9 B3 domain-containing protein At2g31420-like6.3e-1947.48Show/hide
Query:  VGGKRRKRKNEAVDD----------------KPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKF
        +GG  RKRKN   +D                  KK  Q E+VFS+TIEMP+ LRDRI E+GGYDIQIVIQKRLQD D++ +H + SIPI+KL ++F T+ 
Subjt:  VGGKRRKRKNEAVDD----------------KPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKF

Query:  EEQ--------KKKANEMEVLIIDSCLRESVISLRKCMI
        E+Q        +   N +  LI+D CLRES I L+K  I
Subjt:  EEQ--------KKKANEMEVLIIDSCLRESVISLRKCMI

A0A6J1HD06 B3 domain-containing protein At1g05920-like8.5e-1644.35Show/hide
Query:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE----------EQKKKANEMEV
        KRKN   DD+P+++ +RE+VFS+T+EMP++LR RI  +GG D+Q+V QK+LQ+ D +++H +  IP +KL ++FAT+ E           ++++   M+V
Subjt:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFE----------EQKKKANEMEV

Query:  LIIDSCLRESVISLR
         IID+ LRESVI L+
Subjt:  LIIDSCLRESVISLR

A0A6J1K5B4 B3 domain-containing protein At1g05920-like1.7e-1646.96Show/hide
Query:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQKKKANE----------MEV
        KRKN   DD+P+++ +RE+VFS+T+EMP++LR RI  +GG D+QIV+QK+LQ+ D +++H +  IP +KL + FAT+ E +     E          MEV
Subjt:  KRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQKKKANE----------MEV

Query:  LIIDSCLRESVISLR
         IID+ LRESVI L+
Subjt:  LIIDSCLRESVISLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTTGGAGGAAAGAGGCGTAAGAGGAAGAACGAAGCTGTTGATGATAAACCGAAGAAGGAGATTCAAAGGGAAATTGTGTTTTCAACGACGATCGAGATGCCATC
GTCGTTGCGAGACCGAATCATCGAGATAGGTGGCTATGACATTCAAATTGTGATTCAAAAGCGATTGCAAGACATAGATGTAGACGAAGATCATGATCAATTCTCCATTC
CGATCGAAAAGCTCAAAAGCAATTTCGCAACGAAATTCGAAGAACAAAAGAAGAAAGCTAATGAGATGGAAGTGCTTATAATTGATTCTTGTTTGAGAGAAAGTGTGATT
AGCTTGAGAAAGTGCATGATCGCAAGGAATTTCACACCATCTTTGCTTCGCCCTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTTGGAGGAAAGAGGCGTAAGAGGAAGAACGAAGCTGTTGATGATAAACCGAAGAAGGAGATTCAAAGGGAAATTGTGTTTTCAACGACGATCGAGATGCCATC
GTCGTTGCGAGACCGAATCATCGAGATAGGTGGCTATGACATTCAAATTGTGATTCAAAAGCGATTGCAAGACATAGATGTAGACGAAGATCATGATCAATTCTCCATTC
CGATCGAAAAGCTCAAAAGCAATTTCGCAACGAAATTCGAAGAACAAAAGAAGAAAGCTAATGAGATGGAAGTGCTTATAATTGATTCTTGTTTGAGAGAAAGTGTGATT
AGCTTGAGAAAGTGCATGATCGCAAGGAATTTCACACCATCTTTGCTTCGCCCTGGTTAA
Protein sequenceShow/hide protein sequence
MAVGGKRRKRKNEAVDDKPKKEIQREIVFSTTIEMPSSLRDRIIEIGGYDIQIVIQKRLQDIDVDEDHDQFSIPIEKLKSNFATKFEEQKKKANEMEVLIIDSCLRESVI
SLRKCMIARNFTPSLLRPG