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Lsi08G013960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G013960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSANT domain-containing protein
Genome locationchr08:22238706..22238999
RNA-Seq ExpressionLsi08G013960
SyntenyLsi08G013960
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065236.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]2.6e-3588.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQRQSL  SL+  L LF
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF

KAG7029384.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-2886.67Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYS---KHYSYNNFLDEEQRQ
        +FENALTVYDKDSPDRWQKLA ++GGKTAEEVKRHYEMLVEDVHNIETGR+PLPNYS   KHYS N FLDEEQRQ
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYS---KHYSYNNFLDEEQRQ

XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.0e-3294.37Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]1.1e-3091.67Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQR
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSY NNF+DEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]1.7e-3194.37Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        MFENALTVYDKDSPDRWQKLA AIGGKTAEEVK HY+MLVEDVHNIETGR+PLPNYSKHYSYNNFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein4.4e-3392.11Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQRQSLF
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSY NNF+DEEQRQSLF
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSY-NNFLDEEQRQSLF

A0A1S3BBR2 protein RADIALIS-like 49.8e-3394.37Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQR

A0A5A7VFX7 Protein RADIALIS-like 41.2e-3588.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF
        MFENALTVYDKDSPDRWQKLARA+GGKTA+EVKRHYEMLVEDVHNIETG++PLPNYSKHYSYNNFLDEEQRQSL  SL+  L LF
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF

A0A6J1K580 protein RADIALIS-like 41.6e-2785.14Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR
        +FENALTVYDKDSPDRWQKLA ++GGKTAEEVKRHYEMLVEDVHNIETGR+PLPNY   SKH S N FLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR

A0A6J1KQS6 protein RADIALIS-like 41.4e-2686.49Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR
        +FENALTVYDKDSPDRWQKLA A+GGKTAEEVKRHYEMLVEDVHNIE GRIPLPNY   SK Y Y+NFLDEEQR
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY---SKHYSYNNFLDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 17.3e-1761.82Show/hide
Query:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        FE AL  YD+D+P+RWQ +A+ +GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q1A173 Protein RADIALIS-like 63.2e-2063.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE
        MFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE

Q1G3C4 Protein RADIALIS-like 47.3e-1767.27Show/hide
Query:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        FE AL  +DKD+PDRWQK+ARA+GGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q6NNN0 Protein RADIALIS-like 33.3e-1764.29Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        +FE AL  YD+D+PDRW  +ARA+GGK+AEEV+RHYE+L+ DV++IE+GR P PNY
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Q8GW75 Protein RADIALIS-like 53.3e-1767.86Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        MFE AL VYDKD+PDRWQ +A+A+G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.3e-1867.86Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        MFE AL VYDKD+PDRWQ +A+A+G K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

AT1G75250.1 RAD-like 65.0e-2149Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF------DSRFFSSKI
        MFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++   + +   L  +L ++      D   FS K+
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLF------DSRFFSSKI

AT1G75250.2 RAD-like 62.2e-2163.24Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE
        MFE AL VYDKD+PDRW  +A+A+GGKT EEVKRHY++LVED+ NIETGR+PLPNY    S +  +++
Subjt:  MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDE

AT2G18328.1 RAD-like 45.2e-1867.27Show/hide
Query:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        FE AL  +DKD+PDRWQK+ARA+GGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY

AT4G39250.1 RAD-like 15.2e-1861.82Show/hide
Query:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY
        FE AL  YD+D+P+RWQ +A+ +GGKT EEVKRHYE+LV+D+++IE G +P PNY
Subjt:  FENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAAAATGCTCTGACAGTTTACGACAAGGACTCGCCAGACCGGTGGCAGAAGCTGGCGAGAGCGATCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGA
GATGCTGGTGGAGGACGTCCACAATATTGAGACTGGCAGAATTCCTTTGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTC
TTTTCTTCTCTTTAAACTTTTTATTATTGTTATTTGATTCTCGATTTTTTTCGTCTAAAATTGGATGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAAAATGCTCTGACAGTTTACGACAAGGACTCGCCAGACCGGTGGCAGAAGCTGGCGAGAGCGATCGGCGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGA
GATGCTGGTGGAGGACGTCCACAATATTGAGACTGGCAGAATTCCTTTGCCCAATTACTCTAAACATTATTCCTACAACAACTTTCTTGATGAAGAACAAAGGCAATCTC
TTTTCTTCTCTTTAAACTTTTTATTATTGTTATTTGATTCTCGATTTTTTTCGTCTAAAATTGGATGGAGATGA
Protein sequenceShow/hide protein sequence
MFENALTVYDKDSPDRWQKLARAIGGKTAEEVKRHYEMLVEDVHNIETGRIPLPNYSKHYSYNNFLDEEQRQSLFFSLNFLLLLFDSRFFSSKIGWR