CuGenDBv2

Gene ID	Lsi08G015010
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein GID2-like
Genome location	chr08:23145324..23145731
RNA-Seq Expression	Lsi08G015010
Synteny	Lsi08G015010
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

7.9e-59

84.78

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Query:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP
        +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP

Query:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        +IG   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_004143017.1 F-box protein GID2 [Cucumis sativus]

2.9e-61

85.92

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Query:  MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHS
        M  +IKK KS S +QE        S FANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHS
Subjt:  MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHS

Query:  LYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPF PMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

1.2e-62

86.71

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Query:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH
        M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH

Query:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPF PMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

6.7e-58

84.06

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Query:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP
        +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP

Query:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        ++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

1.0e-58

84.17

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Query:  IKKIKSDSEEQE-----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFS
        +KKIKS S+EQ+     + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW+KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF 
Subjt:  IKKIKSDSEEQE-----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFS

Query:  PMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        P+IG   C PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  PMIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

1.4e-61

85.92

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Query:  MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHS
        M  +IKK KS S +QE        S FANLDDNLLFEVFKHVDARTLAT AGVSKQWFKTAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLHS
Subjt:  MKKKIKKIKSDSEEQE------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHS

Query:  LYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        LYPF PMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  LYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A1S3BDV6 F-box protein GID2-like

5.7e-63

86.71

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Query:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH
        M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH

Query:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPF PMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A5A7V5E1 F-box protein GID2-like

5.7e-63

86.71

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Query:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH
        M  KIKK KSDS +QE         S FANLDDNLLFEVFKHVDARTLATAAGV+KQWFKTAHDERLWELLCTKHWTN+GCANQQLRSVVLALGGFRRLH
Subjt:  MKKKIKKIKSDSEEQE-------AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLH

Query:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        SLYPF PMIGCN PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  SLYPFSPMIGCN-PWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1HCI1 F-box protein GID2-like

3.2e-58

84.06

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Query:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP
        +KKIKS SEEQ+    + S FANLDDNLLFEVFKHVDARTLATAAGVSKQW KTAHDE LWELLCTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP

Query:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        ++G   C PWGKDE+HLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

A0A6J1K7I7 F-box protein GID2-like

2.3e-56

81.88

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Query:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP
        +KKIKS S+EQ+    + S FANLDDNLLFEVFKHVDARTLATA+GVSKQW+KTAHDE LWELLCTKHW N+GCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  IKKIKSDSEEQE----AKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSP

Query:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS
        +IG   C  WGK EVHLSLSLLSIRYYEKMKFKNRPTS
Subjt:  MIG---CNPWGKDEVHLSLSLLSIRYYEKMKFKNRPTS

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.4e-21

44.62

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Query:  DSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLY--PFSPMIGCNP--
        D+ E E + R  +L ++L+FEV +  +ARTLA AA VS+ W + A DERLWE  C + W N+G + +QLR+VVL+LGGFRRLH++Y  P        P  
Subjt:  DSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLY--PFSPMIGCNP--

Query:  ---------WGKDEVHLSLSLLSIRYYEKM
                  G+D+V LSLSL SI +++ M
Subjt:  ---------WGKDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

1.9e-10

35.58

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Query:  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ LSLSL  + Y
Subjt:  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Q9STX3 F-box protein GID2

2.6e-41

65.65

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Query:  KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN
        KK+KS  EE+     F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   N
Subjt:  KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN

Query:  P---WGKDEVHLSLSLLSIRYYEKMKFKNRP
        P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  P---WGKDEVHLSLSLLSIRYYEKMKFKNRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.9e-42

65.65

Show/hide

Query:  KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN
        KK+KS  EE+     F+NLD+NL++EV KHVDA+TLA ++ VSK W KTA DERLWEL+CT+HWTN+GC   QLRSVVLALGGFRRLHSLY + P+   N
Subjt:  KKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCN

Query:  P---WGKDEVHLSLSLLSIRYYEKMKFKNRP
        P   +GKDE+ L+LSLLSIRYYEKM F  RP
Subjt:  P---WGKDEVHLSLSLLSIRYYEKMKFKNRP

AT5G48170.1 F-box family protein

1.3e-11

35.58

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Query:  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRY
        ++L E+ + +D  +L +AA V + W   A ++ +WE LC +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D++ LSLSL  + Y
Subjt:  NLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNP---WGKDEVHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Sequences

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CDS sequence

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ATGAAGAAGAAAATCAAGAAAATTAAATCAGATTCAGAGGAACAAGAAGCAAAATCACGTTTTGCAAATTTAGACGACAATCTGTTGTTCGAGGTGTTTAAGCACGTCGA
CGCAAGGACACTGGCCACGGCGGCCGGCGTCAGCAAGCAGTGGTTCAAAACCGCCCACGATGAGCGCCTCTGGGAGCTACTCTGCACCAAACACTGGACCAACGTCGGCT
GTGCTAATCAACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGTCGATTACACTCTCTTTACCCATTTTCCCCTATGATTGGATGTAATCCATGGGGCAAAGAC
GAGGTTCATCTCTCACTTTCTCTTCTCTCAATTCGCTACTACGAGAAGATGAAATTCAAGAACAGACCCACATCTTGA

mRNA sequence

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Protein sequence

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MKKKIKKIKSDSEEQEAKSRFANLDDNLLFEVFKHVDARTLATAAGVSKQWFKTAHDERLWELLCTKHWTNVGCANQQLRSVVLALGGFRRLHSLYPFSPMIGCNPWGKD
EVHLSLSLLSIRYYEKMKFKNRPTS

Lsi08G015010 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome