CuGenDBv2

Gene ID	Lsi08G016260
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Genome location	chr08:24185044..24185652
RNA-Seq Expression	Lsi08G016260
Synteny	Lsi08G016260
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0034219 - carbohydrate transmembrane transport (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function) GO:0051119 - sugar transmembrane transporter activity (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7029231.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-94

95.05

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINST+NHNTPK IPKPISLLSLQNLPKGLISSKSN +SNLSTFLSSTAIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+AL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASE+AMIADASSSDSRGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

KGN62604.2 hypothetical protein Csa_018753 [Cucumis sativus]

6.0e-95

96.53

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

XP_004142959.3 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

6.0e-95

96.53

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

XP_008444395.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo]

6.6e-94

95.54

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        S+
Subjt:  SE

XP_038886078.1 LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.7e-97

98.02

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGL+SSKSNQNSNLST LSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQIN+MRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKA1 Uncharacterized protein

2.9e-95

96.53

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVF+TL SSDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPA+AWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

A0A1S3B9R1 photosystem II core complex proteins psbY, chloroplastic

3.2e-94

95.54

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        S+
Subjt:  SE

A0A5A7UYJ2 Photosystem II core complex proteins psbY

3.2e-94

95.54

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINSTK HNT K IPKPISLLSLQNLPKGLISSKSN+NSNLSTFLSSTAIAGAVF+TL +SDPAFAAQQIAEIAADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASG MYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        S+
Subjt:  SE

A0A6J1BQF3 photosystem II core complex proteins psbY, chloroplastic

1.1e-89

91.09

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAATMATMAVLSVKCTSINS+KNH TPKPI  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIAGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGL AS  MYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

F6GVJ9 Uncharacterized protein

6.1e-77

80.69

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL
        MAAT+ATMA+L+ KC SINS KN N  KP  KPISLLS+QNLPKGL + KS++N NLST L+ TAIAGA+FSTLSS DPA AAQQIAEI ADGDNRGLAL
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLAL

Query:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR
        LLP+IPAIAWVLFNILQPALNQ+N+MRS KGVIIGLGLGGL ASG M  P ASASEIA +ADA+SSD+RGQLLLFVV PAILWVLYNILQPALNQLNRMR
Subjt:  LLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMR

Query:  SE
        SE
Subjt:  SE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.8e-46

57.56

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N       P P PK    L  Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASGL+  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

6.1e-50

60.77

Show/hide

Query:  MAATMA-TMAVLSVKCTSINSTKNHNT-PKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN
        MAATMA TMAVL+ KC ++N+ K  +T PKP  KPISL      P GL +SK      LS  +++ AIAGAVF+TL S DPAFA QQ+A+IAA+    DN
Subjt:  MAATMA-TMAVLSVKCTSINSTKNHNT-PKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAAD---GDN

Query:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGLMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL
        RGLALLLP+IPA+ WVLFNILQPALNQIN+MR++ K  I+GLGL GL  SGL+ A P+A A+   +   A  SD+RG LLL VV PAI WVL+NILQPAL
Subjt:  RGLALLLPLIPAIAWVLFNILQPALNQINRMRSD-KGVIIGLGLGGLTASGLMYA-PDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPAL

Query:  NQLNRMRSE
        NQLN+MRS+
Subjt:  NQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.3e-47

57.56

Show/hide

Query:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG
        MAA MAT    + KC S+N       P P PK    L  Q   K  IS  +    N+S  ++STA+AGAVFS+LS S+PA A QQIA++A   A  DNRG
Subjt:  MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIA---ADGDNRG

Query:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL
        LALLLP++PAIAWVL+NILQPA+NQ+N+MR  KG+++GLG+ GGL ASGL+  P  + +  A  A A+SSDSRGQLLL VV PA+LWVLYNILQPALNQ+
Subjt:  LALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGL-GGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQL

Query:  NRMRS
        N+MRS
Subjt:  NRMRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAGCTACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCACCAAAAACCACAACACCCCAAAGCCAATCCCCAAACCCATCTCCCTCCT
CTCTCTCCAAAACCTTCCCAAAGGACTAATCTCATCAAAATCTAATCAAAATTCCAACTTATCAACCTTCCTCTCCAGCACCGCCATCGCCGGAGCTGTCTTTTCAACCT
TGAGCTCATCGGATCCTGCATTTGCAGCCCAACAAATTGCAGAGATAGCAGCTGATGGCGACAACCGCGGTTTAGCCCTTTTGCTACCTCTTATTCCGGCCATAGCATGG
GTTCTGTTCAACATATTACAGCCAGCACTCAATCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGCTTAT
GTACGCACCTGATGCTTCGGCCAGCGAGATCGCCATGATTGCCGATGCTTCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCACCAGCCATTCTTTGGG
TGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATMATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAW
VLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGLMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Lsi08G016260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome