; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G016580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G016580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L20
Genome locationchr08:24377316..24378963
RNA-Seq ExpressionLsi08G016580
SyntenyLsi08G016580
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER56026.1 50S ribosomal protein L20 [Striga asiatica]4.2e-0436.36Show/hide
Query:  VLQTGSAGAAIQIPPALSQQVNGGIGGSSGSHLNSGIPSIVGCSFDCSGHSLPGRLSKNGVADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVK
        V +TG AG     PPA+ + VN  I     SH     P I   S     H L GR+ +     G V A+ PV  P   + K+VV   H AA++ N A V 
Subjt:  VLQTGSAGAAIQIPPALSQQVNGGIGGSSGSHLNSGIPSIVGCSFDCSGHSLPGRLSKNGVADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVK

Query:  REALRKDGTG
        R AL ++ TG
Subjt:  REALRKDGTG
KAG7020093.1 hypothetical protein SDJN02_16775, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-5165.41Show/hide
Query:  IPINTPTNKTATELTSETIISIIVPAKLVKGNF---------IVRVSHEATCVEGSCFGSRQAFQDRSRGVLQTGSAGAAIQIPPALSQQVNGGIGGSSG
        IPI TP  KTA ELT+E  I+I++PA++V   F           RVS EA  VEG CFG RQAF+DRSRGVLQTGSAGAA QI PALSQQV+  IGGS  
Subjt:  IPINTPTNKTATELTSETIISIIVPAKLVKGNF---------IVRVSHEATCVEGSCFGSRQAFQDRSRGVLQTGSAGAAIQIPPALSQQVNGGIGGSSG

Query:  SHLNSGIPSIVGCSFDCSGHSLPGRLSKNGV-ADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVKREALRKDGTGFRIT
         H NSGIPSIVGC+ +CS HSLPGRL K GV ++G V AHSPV+RP  FVIKAVVLSPHEAAIQEN A ++R+ALR+D T F IT
Subjt:  SHLNSGIPSIVGCSFDCSGHSLPGRLSKNGV-ADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVKREALRKDGTGFRIT
TrEMBL top hitse value%identityAlignment
A0A5A7RFR7 50S ribosomal protein L202.0e-0436.36Show/hide
Query:  VLQTGSAGAAIQIPPALSQQVNGGIGGSSGSHLNSGIPSIVGCSFDCSGHSLPGRLSKNGVADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVK
        V +TG AG     PPA+ + VN  I     SH     P I   S     H L GR+ +     G V A+ PV  P   + K+VV   H AA++ N A V 
Subjt:  VLQTGSAGAAIQIPPALSQQVNGGIGGSSGSHLNSGIPSIVGCSFDCSGHSLPGRLSKNGVADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVK

Query:  REALRKDGTG
        R AL ++ TG
Subjt:  REALRKDGTG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATGTTACTAGCCTTGATGTCTCTATGAATGATCTTGGTTTTCGAGTTCTCATGAAGAAAAGCCTCTTCACAGCTATCTCTCTTCCATCCGACAAAACTCCCTA
TACCAACATGATTCCAATCAACACTCCAACGAATAAAACAGCAACAGAGCTCACCAGTGAGACTATAATTTCTATAATAGTACCTGCAAAGTTGGTGAAAGGAAATTTCA
TAGTTAGAGTATCTCATGAAGCAACCTGTGTTGAGGGCTCTTGCTTCGGATCGAGGCAAGCATTTCAAGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGCAGGAGCT
GCGATTCAAATTCCTCCAGCACTGAGCCAACAAGTAAACGGAGGCATTGGGGGTTCCAGTGGGAGCCACTTGAATTCTGGCATACCCTCCATTGTTGGATGCAGTTTCGA
TTGCTCGGGCCACAGCCTGCCTGGCCGACTGTCCAAAAATGGAGTTGCTGATGGAATTGTTACCGCACACAGCCCTGTCAAGAGGCCCCGAAAATTCGTCATAAAAGCTG
TAGTTCTCAGCCCTCATGAAGCAGCCATCCAGGAAAATCCGGCCGCCGTTAAAAGGGAAGCATTGAGGAAGGACGGTACGGGCTTCCGCATAACACAACACACAGTCCAT
CAACGACAAATCTCCGTAACATTGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATGTTACTAGCCTTGATGTCTCTATGAATGATCTTGGTTTTCGAGTTCTCATGAAGAAAAGCCTCTTCACAGCTATCTCTCTTCCATCCGACAAAACTCCCTA
TACCAACATGATTCCAATCAACACTCCAACGAATAAAACAGCAACAGAGCTCACCAGTGAGACTATAATTTCTATAATAGTACCTGCAAAGTTGGTGAAAGGAAATTTCA
TAGTTAGAGTATCTCATGAAGCAACCTGTGTTGAGGGCTCTTGCTTCGGATCGAGGCAAGCATTTCAAGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGCAGGAGCT
GCGATTCAAATTCCTCCAGCACTGAGCCAACAAGTAAACGGAGGCATTGGGGGTTCCAGTGGGAGCCACTTGAATTCTGGCATACCCTCCATTGTTGGATGCAGTTTCGA
TTGCTCGGGCCACAGCCTGCCTGGCCGACTGTCCAAAAATGGAGTTGCTGATGGAATTGTTACCGCACACAGCCCTGTCAAGAGGCCCCGAAAATTCGTCATAAAAGCTG
TAGTTCTCAGCCCTCATGAAGCAGCCATCCAGGAAAATCCGGCCGCCGTTAAAAGGGAAGCATTGAGGAAGGACGGTACGGGCTTCCGCATAACACAACACACAGTCCAT
CAACGACAAATCTCCGTAACATTGAGCTAG
Protein sequenceShow/hide protein sequence
MADVTSLDVSMNDLGFRVLMKKSLFTAISLPSDKTPYTNMIPINTPTNKTATELTSETIISIIVPAKLVKGNFIVRVSHEATCVEGSCFGSRQAFQDRSRGVLQTGSAGA
AIQIPPALSQQVNGGIGGSSGSHLNSGIPSIVGCSFDCSGHSLPGRLSKNGVADGIVTAHSPVKRPRKFVIKAVVLSPHEAAIQENPAAVKREALRKDGTGFRITQHTVH
QRQISVTLS