; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi08G016820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G016820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationchr08:24559730..24563568
RNA-Seq ExpressionLsi08G016820
SyntenyLsi08G016820
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142984.1 uncharacterized protein At4g28440 [Cucumis sativus]6.5e-6999.27Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

XP_022131585.1 uncharacterized protein At4g28440-like [Momordica charantia]1.2e-6797.08Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQ RQMRIAECLVGDETGMIIFTARNDQVD+MKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA+FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

XP_022951207.1 uncharacterized protein At4g28440-like [Cucurbita moschata]7.2e-6897.81Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA+FTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

XP_022961781.1 uncharacterized protein At4g28440-like [Cucurbita moschata]1.2e-6797.81Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

XP_038883981.1 uncharacterized protein At4g28440 [Benincasa hispida]2.2e-6999.27Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTK+DQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

TrEMBL top hitse value%identityAlignment
A0A0A0LNA1 Uncharacterized protein3.2e-6999.27Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

A0A1S3BA24 uncharacterized protein At4g28440 isoform X13.2e-6999.27Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

A0A5A7V0K6 Nucleic acid-binding protein3.2e-6999.27Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA FTVKEDNNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

A0A6J1GH14 uncharacterized protein At4g28440-like3.5e-6897.81Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA+FTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

A0A6J1KS21 uncharacterized protein At4g28440-like3.5e-6897.81Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL
        MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATI LRNAKIDMFKGSMRL
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRL

Query:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE
        AVDRWGRVEVTEPA+FTVKE+NNLSLIEYELVNVVEE
Subjt:  AVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284404.4e-4466.67Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAV
        RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K RP    +R     RI ECL+GDETG I+FTARNDQVDLMK GAT+ LRN++IDMFKG+MRL V
Subjt:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVL---QKGRPDGPQAR---QMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAV

Query:  DRWGRVEVTEPATFTVKEDNNLSLIEYELVNV
        D+WGR+E T  A+FTVKEDNNLSL+EYEL+NV
Subjt:  DRWGRVEVTEPATFTVKEDNNLSLIEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.0e-5679.56Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV

AT1G10590.2 Nucleic acid-binding, OB-fold-like protein1.0e-5679.56Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein1.0e-5679.56Show/hide
Query:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM
        MAE+   LRKPVFTKV++LRPGT+GH+L VKVVNTKMV+Q+  GRP GPQ+RQMRIAECLVGDETG+IIFTARNDQVD+MKEG+ +TLRNAKIDM+KGSM
Subjt:  MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK--GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSM

Query:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV
        RLAVDRWGRVEV  EP   TVK+DNNLSLIEYELV+V
Subjt:  RLAVDRWGRVEVT-EPATFTVKEDNNLSLIEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein1.4e-6182.48Show/hide
Query:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMR
        MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+TKMVLQKGR DGPQARQ+RI+EC+VGDETG+I+FTARNDQVDLMKEG+T+TLRNAKIDM+KGSMR
Subjt:  MAES-KPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMR

Query:  LAVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVE
        LAVD+WGRVEVTEPA+F VKED N+SLIEYELVNVVE
Subjt:  LAVDRWGRVEVTEPATFTVKEDNNLSLIEYELVNVVE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein4.2e-5075.38Show/hide
Query:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGR
        +KPVF KVDQL+PGTSGHTLTVKVV+   V QK G       R  RI+ECLVGDET  I+FTARNDQV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR
Subjt:  RKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQK-GRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGR

Query:  VEVTEPATFTVKEDNNLSLIEYELVNVVEE
        +E TEPA  TVKEDNNLSL+EYELVNVVEE
Subjt:  VEVTEPATFTVKEDNNLSLIEYELVNVVEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTACAGTCAAGGTTGTGAATACGAAGAT
GGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCCTAGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAGAAATGATC
AAGTGGACTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGAGTTGAAGTT
ACTGAGCCTGCCACTTTCACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTCGTGGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
CTTTATTTCTCTCCTCGAAGCTTGAGTTTGACGGCTACGTTTCTCAAATCAGATCGGCCTCCCTTTTCCCCTTCGTCTTTGCCTCTACCATTCGTAAAAGGTATTCGTAT
CCGGGGAAATGGCAGAATCAAAACCAGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTACAGTCAAGGTTGTGAAT
ACGAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCCTAGTGGGTGATGAGACTGGAATGATCATATTTACTGCCAG
AAATGATCAAGTGGACTTGATGAAAGAAGGTGCTACTATAACCCTGCGCAATGCTAAGATAGACATGTTTAAAGGATCAATGAGACTTGCTGTGGACAGGTGGGGCCGAG
TTGAAGTTACTGAGCCTGCCACTTTCACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTCGTGGAAGAGTGAATTTTGTGATCGTGTTCA
TTTTCCTGCTGCAACCTGACCATAAAATAAAACAATCAAGCTACAAAATCACAAAGTTTCCGTTGGGGTACTGAAAATGCTCGCAGAAGTTCATTATTAGGGAATAGAAA
TCTGGAGGCCAGTAGTACGAAAGTTGATTTTCATCCCTGCAGCCTATTGGTGGAACCGTTGTTGGGATCTACGAACAGGTGGGTAATGGCTTAGTTGATGGAAGAAGGCT
TAGCTGGCTTTTTTATTCTTCTTTTGTCTAGTACTTTATTGCTTATGAACACGGTTTATGATGTTCTTGAACTATCGTCAGATGACAAGACTAGCCTTGCTCCGTTAAAA
CTTATGTTTATTTTTATAATTCAAGGTCCACGCCAACTTAACTGCTTTGAGTGTCGAATCCAATGCTTAAATGATTTTGATTACCCCAAAAATGTGTGGATTTCATGTGT
TATAGTTTAGGAA
Protein sequenceShow/hide protein sequence
MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEV
TEPATFTVKEDNNLSLIEYELVNVVEE