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Lsi08G016840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi08G016840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationchr08:24581280..24584734
RNA-Seq ExpressionLsi08G016840
SyntenyLsi08G016840
Gene Ontology termsGO:0030488 - tRNA methylation (biological process)
GO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008173 - RNA methyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029191.1 hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-3686.54Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KLTNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGC
Subjt:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

XP_004145570.1 uncharacterized protein LOC101210124 [Cucumis sativus]9.4e-3680.77Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LTNFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEGM
        S+ M
Subjt:  SEGM

XP_022961783.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata]5.5e-3686.54Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KLTNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGC
Subjt:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

XP_022996536.1 uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima]2.9e-3786.54Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLTNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEGM
        SE M
Subjt:  SEGM

XP_038885251.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida]4.8e-4091.26Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAACCSWKTLRISSSSAR LLHRSS SPSASHFVSKPT+SAGLP AKP ASSR  VQKLTNFRLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWG L
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEG
        SEG
Subjt:  SEG

TrEMBL top hitse value%identityAlignment
A0A0A0L605 Radical_SAM domain-containing protein4.6e-3680.77Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAACCSWKT+ ISSSSAR LLHRSS SPSASHFVS PT+S GLP AKP ASSR SV +LTNFRLPVEL+S+QSLMPL +VTAS LFTSLLS HNNSWGCL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEGM
        S+ M
Subjt:  SEGM

A0A5D3D8K9 Dual-specificity RNA methyltransferase RlmN isoform X12.3e-3277.88Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAACCSWKT+ ISSSSARALLHR S SPSASHFVS PT+S GL  A+P+ASSR SVQ+LTNF LPVEL+S+QSLMPL +VTASALFTSLLS HNNS  CL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEGM
        S+ M
Subjt:  SEGM

A0A6J1E309 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial7.8e-3682.52Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAACC+WKTLR+SSSS R L+ RSS S SASHFVS+PT   GLP AKP+AS R SVQKLTN RLPVELSSVQSLMPLH+VTASALFTSLLSLHNNSWGCL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEG
        SEG
Subjt:  SEG

A0A6J1HCT7 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial2.7e-3686.54Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC
        MAAC +WKTLRISSSSAR LL RSS S PSASH VSKPT+SA LP AKPSASSR SV KLTNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGC
Subjt:  MAACCSWKTLRISSSSARALLHRSSPS-PSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

A0A6J1K524 uncharacterized protein LOC111491756 isoform X21.4e-3786.54Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL
        MAAC +WKTLRISSSSAR LL RSS SPSASH VSKPT+SA LP AKPSASSR SV KLTNFRLPVELSSVQSLMPLH+ TASALFTSLLSLHNNSWGCL
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCL

Query:  SEGM
        SE M
Subjt:  SEGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein9.2e-0534.78Show/hide
Query:  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM
        +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   S++PLH+  ASA   S LS+ + SWG + +G+
Subjt:  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGM

AT1G55205.2 unknown protein1.2e-0435.16Show/hide
Query:  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG
        +S+  +   SS   S +  +SK  +  + LP    S+S   +  ++  +FRLPVELS   S++PLH+  ASA   S LS+ + SWG + +G
Subjt:  SSARALLHRSSPSPSASHFVSKPTIS-AGLPFAKPSASSRLSVQKLT-NFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG

AT1G70350.1 unknown protein4.4e-1554.81Show/hide
Query:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASS-RLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC
        MAA    + L+ SSSS + L  RSS + SA    SK   SAG+ F   S+SS R S+++LT  R+PVELS+  SL+PLH+VTASAL TSLLSL N +W C
Subjt:  MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASS-RLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGC

Query:  LSEG
        LSEG
Subjt:  LSEG

AT4G17310.1 unknown protein7.8e-0439.78Show/hide
Query:  SSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNF---RLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG
        +S+ R L +R+S S   S   S    + G   A  SA  RL  Q   +F   R P EL  VQSL+PLH+  A+A  TS LS  + S   LS+G
Subjt:  SSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNF---RLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCCGCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACC
TACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCGCTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTC
TAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGT
ATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATCACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACAT
CAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGATGAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA
mRNA sequenceShow/hide mRNA sequence
CGATCTTCTCTTCTTTACTTCCAAATTTTGACTTGAAAGTTGAATCAGATAGCCAAGGGAACATGGCGGCTTGCTGTTCCTGGAAAACCCTACGAATTTCTTCCTCTTCC
GCTAGAGCTCTCCTTCACCGTTCCTCACCCTCTCCCTCTGCATCTCATTTTGTGTCCAAACCTACTATATCTGCCGGACTTCCTTTCGCAAAGCCGTCCGCATCTTCCCG
CTTATCTGTTCAGAAGCTTACAAACTTCAGGCTTCCAGTGGAGTTATCAAGCGTGCAGTCTCTAATGCCATTGCACAATGTTACTGCTTCTGCCTTGTTTACTTCGTTGC
TTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGCATGGTGCTGGTCGACCAGGGTATGTGCAACATCAGCAAGAAGAAGTCCAAGAAAGGGCTCAAAGAAATC
ACCTACCTTGGAGACAATTCCAAGAAATCCAAAGACCATGACAAGATCTTCAAGAAAGACATCAAGAATTCCAAGACTGGGATTCTTCAAGCGAATACGACCAAGAAGAT
GAGTTCAATGATCCAAGAGGAAGGCAAGAAGAACGATATGAAGTAA
Protein sequenceShow/hide protein sequence
MAACCSWKTLRISSSSARALLHRSSPSPSASHFVSKPTISAGLPFAKPSASSRLSVQKLTNFRLPVELSSVQSLMPLHNVTASALFTSLLSLHNNSWGCLSEGMVLVDQG
MCNISKKKSKKGLKEITYLGDNSKKSKDHDKIFKKDIKNSKTGILQANTTKKMSSMIQEEGKKNDMK