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Lsi09G001330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNAC domain-containing protein 12
Genome locationchr09:1322970..1324500
RNA-Seq ExpressionLsi09G001330
SyntenyLsi09G001330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042644.1 NAC domain-containing protein 12 [Cucumis melo var. makuwa]8.2e-5287.5Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQHHH-HQQQHHHH
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNGHDER A+EDDE+EQQQ HHH  QQQHHHH
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQHHH-HQQQHHHH

Query:  MQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        MQVS+RGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  MQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

XP_004143941.1 NAC domain-containing protein 12 [Cucumis sativus]1.3e-4983.1Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQ-------HHHHQ
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNG DER AMEDDE+EQQQQ       HHH Q
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQ-------HHHHQ

Query:  QQHHHHMQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        Q HHHHMQVS+R LGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  QQHHHHMQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

XP_008437451.1 PREDICTED: NAC domain-containing protein 12 [Cucumis melo]4.8e-5285.07Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQ
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNGHDER+  +D+ ++QQQHHH QQQHHHHMQ
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQ

Query:  VSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        VS+RGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  VSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

XP_022970054.1 NAC domain-containing protein 12-like [Cucurbita maxima]6.7e-4676.52Show/hide
Query:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS
        LDSPTT+PSI+S HQLETTPFD+NIIFNH+ML   E TEP PEL  DRP+VKLDNWVA DRLVASQLNGH+ER++ED E         H+QQHHHHMQVS
Subjt:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS

Query:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        SRGLGYGHENDIWGFTKS+S SSLDPLSH SV
Subjt:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

XP_038875715.1 NAC domain-containing protein 12-like [Benincasa hispida]6.2e-5289.47Show/hide
Query:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQV
        LDSPTTIPSIISLHQLETT FDH IIFNH+MLSVSE TTEPSP     RPIVKLDNWVAFDRLVASQLNGHDERAMEDDE+EQQ    HHQQQHHHHMQV
Subjt:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQV

Query:  SSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        SSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  SSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

TrEMBL top hitse value%identityAlignment
A0A0A0KQL0 NAC domain-containing protein6.3e-5083.1Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQ-------HHHHQ
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNG DER AMEDDE+EQQQQ       HHH Q
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQ-------HHHHQ

Query:  QQHHHHMQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        Q HHHHMQVS+R LGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  QQHHHHMQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

A0A1S3AU20 NAC domain-containing protein 122.3e-5285.07Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQ
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNGHDER+  +D+ ++QQQHHH QQQHHHHMQ
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQ

Query:  VSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        VS+RGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  VSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

A0A5D3C3T9 NAC domain-containing protein 123.9e-5287.5Show/hide
Query:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQHHH-HQQQHHHH
        LDSPTTIPSIISLHQLET +PFDHNIIFNH+MLSVSE TTEPSP     RP+VKLDNWVAFDRLVASQLNGHDER A+EDDE+EQQQ HHH  QQQHHHH
Subjt:  LDSPTTIPSIISLHQLET-TPFDHNIIFNHKMLSVSE-TTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDER-AMEDDENEQQQQHHH-HQQQHHHH

Query:  MQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        MQVS+RGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
Subjt:  MQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

A0A6J1ESP3 NAC domain-containing protein 12-like1.6e-4576.52Show/hide
Query:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS
        LDSPTT+PSI+S HQLETTPFD+NIIFNH+ML   E TEP PEL  DRP+VKLDNWVA DRLVASQLNGH+ER++ED E+EQQQQ        HHHMQVS
Subjt:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS

Query:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        SRGLGYG+ENDIWGFTKS+S SSLDPLSH SV
Subjt:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

A0A6J1I4E3 NAC domain-containing protein 12-like3.2e-4676.52Show/hide
Query:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS
        LDSPTT+PSI+S HQLETTPFD+NIIFNH+ML   E TEP PEL  DRP+VKLDNWVA DRLVASQLNGH+ER++ED E         H+QQHHHHMQVS
Subjt:  LDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHHHQQQHHHHMQVS

Query:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV
        SRGLGYGHENDIWGFTKS+S SSLDPLSH SV
Subjt:  SRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAGTCCGATTGGATCATGCATGAGTATCGCCTCGACGACAGTGACCGTGATATCAATGTTGGACAGCCCCACAACAATCCCTTCAATAATCTCTCTCCACCA
ACTCGAAACGACGCCGTTCGATCACAACATCATCTTCAACCACAAAATGCTTTCGGTTTCAGAAACAACAGAGCCATCGCCAGAGCTCCACCGTGACCGACCCATCGTCA
AGCTCGACAACTGGGTCGCCTTCGACCGACTTGTTGCTTCCCAACTAAACGGCCACGACGAAAGAGCCATGGAAGACGATGAAAACGAACAACAACAGCAACATCATCAT
CATCAACAACAACACCATCATCATATGCAAGTTTCAAGCCGAGGATTGGGATATGGGCATGAGAATGATATTTGGGGTTTCACTAAGTCATCGTCTTCCTCATCATTAGA
CCCACTATCCCATTTGTCGGTTTAG
mRNA sequenceShow/hide mRNA sequence
GCTCTTTCAAAAACCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTACTGAAACTTCAAACTCTACACTTTCCTTCTTCAACATCTCTCTCTTTCTCG
AGAGCTTTCTTCGTTGTTTGTTTTTGTTTTTGCTTTTATGGCAGAACAGGATATGACTCTATCCGTCAATGGCCACTCTCAAGTTCCCCCGGGCTTTCGTTTCCATCCCA
CTGAAGAAGAGCTTCTACATTATTACCTAAGGAAGAAAGTTGCTTTCCAAAAAATTGATCTTGATGTCATTCGTGATGTTGATCTTAACAAGCTTGAACCTTGGGATATT
CAAGAGAAATGCAAGATTGGATCCACCCCACAGAATGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCAACTGGAACTCGGACGAATCGTGCTACCGCGGCTGG
ATTTTGGAAGGCCACCGGCCGAGATAAGATTATTTATACTGGATCCAAAAGAATTGGGTTGAGGAAAACTCTAGTCTTTTACAAAGGACGAGCTCCTCATGGCCAAAAGT
CCGATTGGATCATGCATGAGTATCGCCTCGACGACAGTGACCGTGATATCAATGTTGGACAGCCCCACAACAATCCCTTCAATAATCTCTCTCCACCAACTCGAAACGAC
GCCGTTCGATCACAACATCATCTTCAACCACAAAATGCTTTCGGTTTCAGAAACAACAGAGCCATCGCCAGAGCTCCACCGTGACCGACCCATCGTCAAGCTCGACAACT
GGGTCGCCTTCGACCGACTTGTTGCTTCCCAACTAAACGGCCACGACGAAAGAGCCATGGAAGACGATGAAAACGAACAACAACAGCAACATCATCATCATCAACAACAA
CACCATCATCATATGCAAGTTTCAAGCCGAGGATTGGGATATGGGCATGAGAATGATATTTGGGGTTTCACTAAGTCATCGTCTTCCTCATCATTAGACCCACTATCCCA
TTTGTCGGTTTAG
Protein sequenceShow/hide protein sequence
MAKSPIGSCMSIASTTVTVISMLDSPTTIPSIISLHQLETTPFDHNIIFNHKMLSVSETTEPSPELHRDRPIVKLDNWVAFDRLVASQLNGHDERAMEDDENEQQQQHHH
HQQQHHHHMQVSSRGLGYGHENDIWGFTKSSSSSSLDPLSHLSV