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Lsi09G001650 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001650
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S6 alpha, chloroplastic
Genome locationchr09:1712651..1717275
RNA-Seq ExpressionLsi09G001650
SyntenyLsi09G001650
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000529 - Ribosomal protein S6
IPR035980 - Ribosomal protein S6 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647835.1 hypothetical protein Csa_000386 [Cucumis sativus]3.4e-7677.18Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFKSY
        MSFK++
Subjt:  MSFKSY

XP_016898885.1 PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Cucumis melo]3.6e-7879.41Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYETMVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

XP_023534494.1 30S ribosomal protein S6 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo]5.8e-7676.96Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+ SKSLFS +GIGPALGLGLSVKAQTLEFSGS F+GGFG +DEPPA PGTGFA  LEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLA T+KYEE                          KNKAGETNTYLDGI+LLFTYFTKPESMG+L+A LQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

XP_031741227.1 30S ribosomal protein S6 alpha, chloroplastic [Cucumis sativus]4.4e-7677.18Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFKSY
        MSFK +
Subjt:  MSFKSY

XP_038906485.1 30S ribosomal protein S6 alpha, chloroplastic [Benincasa hispida]4.9e-8382.35Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSKPLSLPPFTHQ+SFPFTLKP KSLFS +GIGPALGLGLSVKAQTLEFSGS FEGG G +DEPPAPPGTGFAAALEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYETMVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESMGIL+ATLQADD+VVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

TrEMBL top hitse value%identityAlignment
A0A0A0KK24 Uncharacterized protein4.8e-7677.94Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK   L PFT+QISFPF LK SK LFS  GIGPALGLGLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALE+KEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

A0A1S4DT54 30S ribosomal protein S6 alpha, chloroplastic1.7e-7879.41Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYETMVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

A0A5D3C6V7 30S ribosomal protein S6 alpha1.7e-7879.41Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSK  SLPPFT+QISFPFTLK SK LFS +GIG ALG+GLSVKAQTLEFSGS FEGG G+QDEPPAPPGTGFA ALEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYETMVVLRPDMSEDERLAFTEKYEE                          KNKAGETNTYLDGINLLFTYFTKPESM +L+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

A0A6J1H3R6 30S ribosomal protein S6 alpha, chloroplastic1.8e-7576.47Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSSTSPLSSKPLSLP FT  ISFPFTL+ SKSLFS +GI PALGLGLSVKAQTLEFSGS F+GGFG +DEPPA PGTGFA  LEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLA T+KYEE                          KNKAGETNTYLDGI+LLFTYFTKPESMG+L+A LQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

A0A6J1K3V4 30S ribosomal protein S6 alpha, chloroplastic-like5.3e-7576.47Show/hide
Query:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC
        MAFTSTLTATSS SPLSSKP SLP FT  ISFPFTL+ SKSLFS +GIGPALGLGLSVKAQTLEFSGS F+GGFG +DEPP  PGTGFA  LEDKEEPQC
Subjt:  MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQC

Query:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS
        PPGLRKYE+MVVLRPDMSEDERLA T+KYEE                          KNKAGETNTYLDGI+LLFTYFTKPESMGIL+ATLQADDDVVRS
Subjt:  PPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRS

Query:  MSFK
        MSFK
Subjt:  MSFK

SwissProt top hitse value%identityAlignment
P82403 30S ribosomal protein S6 alpha, chloroplastic1.2e-3951.43Show/hide
Query:  AFTSTLTATSSTSPLSS--KPLSLPP---FTHQIS-FPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDE-PPAPPGTGFAAALED
        + TSTL ++S T+ L S  KP   P    FTH ++ F   LKPS+  + +         G  VKA  L+FSGS FEGGFG  DE PP+ P  G   A+E+
Subjt:  AFTSTLTATSSTSPLSS--KPLSLPP---FTHQIS-FPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDE-PPAPPGTGFAAALED

Query:  KEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQAD
        K EPQCPPGLR+YETM VLRPDM+EDERL  T+KYEE                          KNKAGETN YLDGI LLFTYFTKPES+  L+A L  D
Subjt:  KEEPQCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQAD

Query:  DDVVRSMSFK
        DDV+RS SFK
Subjt:  DDVVRSMSFK

Q8EKV4 30S ribosomal protein S61.2e-0429.35Show/hide
Query:  LRKYETMVVLRPDMSEDERLAFTEKY--------------EEKNK---AGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK
        +RKYE M ++RPD+ E+ + A  E++              +EK K   A E N Y DG  ++  +    E++   D   + +DD++R M+ K
Subjt:  LRKYETMVVLRPDMSEDERLAFTEKY--------------EEKNK---AGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFK

Q8VY91 30S ribosomal protein S6 alpha, chloroplastic6.7e-4351.46Show/hide
Query:  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEP
        +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    VK+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EP
Subjt:  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEP

Query:  QCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV
        QCPPGLR+YETM VLRPDMSEDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYFTKPES+  L+  L ADDD++
Subjt:  QCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV

Query:  RSMSFK
        RS SFK
Subjt:  RSMSFK

Arabidopsis top hitse value%identityAlignment
AT1G64510.1 Translation elongation factor EF1B/ribosomal protein S6 family protein4.8e-4451.46Show/hide
Query:  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEP
        +S   + S+  PL   SS+PL        +SF  +L+P  SKS      I    G    VK+Q L+FSG+ FEGGFG+ D+P +P G+G + ALEDK EP
Subjt:  TSTLTATSSTSPL---SSKPLSLPPFTHQISFPFTLKP--SKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEP

Query:  QCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV
        QCPPGLR+YETM VLRPDMSEDERL  T+KYEE                          KNKAGETNTYLDGI LLFTYFTKPES+  L+  L ADDD++
Subjt:  QCPPGLRKYETMVVLRPDMSEDERLAFTEKYEE--------------------------KNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVV

Query:  RSMSFK
        RS SFK
Subjt:  RSMSFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAA
ACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGT
TCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATG
GTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCT
CCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGT
CTAGAAATCGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTCACTTCCACTCTCACCGCTACTTCTTCAACCTCTCCTCTCTCCTCCAAGCCCCTTTCCCTTCCCCCATTCACGCATCAAATTTCTTTCCCCTTTACCCTCAA
ACCCTCCAAATCCCTCTTTTCTGCCGAAGGAATCGGCCCTGCTTTGGGTCTCGGATTGTCCGTGAAAGCCCAAACTCTTGAATTTTCAGGTTCGCTCTTCGAAGGGGGGT
TCGGAGCTCAGGATGAACCGCCTGCCCCTCCAGGAACAGGATTCGCCGCTGCCCTCGAAGATAAGGAGGAGCCTCAGTGCCCTCCTGGACTTCGAAAGTACGAGACTATG
GTGGTTTTGAGGCCCGACATGTCTGAAGACGAGAGACTCGCTTTCACCGAGAAATACGAAGAGAAAAACAAAGCTGGTGAAACTAACACTTACTTGGATGGCATCAATCT
CCTCTTCACCTACTTCACAAAACCCGAATCAATGGGAATTCTCGACGCAACACTTCAAGCAGATGACGATGTTGTTCGATCAATGAGTTTCAAGTCATACTGGCAAATGT
CTAGAAATCGA
Protein sequenceShow/hide protein sequence
MAFTSTLTATSSTSPLSSKPLSLPPFTHQISFPFTLKPSKSLFSAEGIGPALGLGLSVKAQTLEFSGSLFEGGFGAQDEPPAPPGTGFAAALEDKEEPQCPPGLRKYETM
VVLRPDMSEDERLAFTEKYEEKNKAGETNTYLDGINLLFTYFTKPESMGILDATLQADDDVVRSMSFKSYWQMSRNR