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Lsi09G001800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionglycine-rich cell wall structural protein 1-like
Genome locationchr09:1895729..1896130
RNA-Seq ExpressionLsi09G001800
SyntenyLsi09G001800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042689.1 uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa]2.9e-2172.09Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEG
        MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  VHHSAN  +CK +GSKKKKEH   KEG
Subjt:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEG

XP_008437383.1 PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo]2.6e-3875.42Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHS
        MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  VHHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHS
Subjt:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHS

Query:  SDSSDSENECHKPHHNKK
        SDSSDSENECHKPHHNKK
Subjt:  SDSSDSENECHKPHHNKK

XP_022146004.1 uncharacterized protein LOC111015315 [Momordica charantia]4.8e-2464.41Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVHHSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHS
        MASLQC+KPAD  HSQ+ QKHDQ   HCF GHVSDKI GVFKGH HHGQAP     A  HHS N      A  S K+KE HKNK+G    KIKD FSDHS
Subjt:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVHHSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHS

Query:  SDSSDSENECHKPHHNKK
        SDSSDS+NE HK H   K
Subjt:  SDSSDSENECHKPHHNKK

XP_022958513.1 glycine-rich cell wall structural protein 1-like [Cucurbita moschata]5.8e-0641.23Show/hide
Query:  CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSS
        C     HGH       H       H H   GGH          GH     P      P   S N G+CK AG  +KK HHKNKEGGF  KIKD FSDH S
Subjt:  CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSS

Query:  DSSDSENECHKPHH
        D+SDS+++C +  H
Subjt:  DSSDSENECHKPHH

XP_038875375.1 uncharacterized protein LOC120067846 [Benincasa hispida]8.9e-4785.34Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSD
        MASLQCNKPADH     QQKHDQQH+HCFGGHVSDKI GVFKGHHHGQAPL  ASAPVHHSANA +CKP GSKKKKEHHKNKEGG   KIKD FSDHSSD
Subjt:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSD

Query:  SSDSENECHKPHHNKK
        SSDSENEC KPHHNKK
Subjt:  SSDSENECHKPHHNKK

TrEMBL top hitse value%identityAlignment
A0A1S3AUH3 uncharacterized protein LOC1034828151.3e-3875.42Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHS
        MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  VHHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHS
Subjt:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHS

Query:  SDSSDSENECHKPHHNKK
        SDSSDSENECHKPHHNKK
Subjt:  SDSSDSENECHKPHHNKK

A0A5A7TMV4 Uncharacterized protein1.4e-2172.09Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEG
        MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  VHHSAN  +CK +GSKKKKEH   KEG
Subjt:  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEG

A0A6J1CWW2 uncharacterized protein LOC1110153152.3e-2464.41Show/hide
Query:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVHHSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHS
        MASLQC+KPAD  HSQ+ QKHDQ   HCF GHVSDKI GVFKGH HHGQAP     A  HHS N      A  S K+KE HKNK+G    KIKD FSDHS
Subjt:  MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVHHSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHS

Query:  SDSSDSENECHKPHHNKK
        SDSSDS+NE HK H   K
Subjt:  SDSSDSENECHKPHHNKK

A0A6J1H399 glycine-rich cell wall structural protein 1-like2.8e-0641.23Show/hide
Query:  CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSS
        C     HGH       H       H H   GGH          GH     P      P   S N G+CK AG  +KK HHKNKEGGF  KIKD FSDH S
Subjt:  CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSS

Query:  DSSDSENECHKPHH
        D+SDS+++C +  H
Subjt:  DSSDSENECHKPHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGAT
CACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGA
AGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAA
CCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGAT
CACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGA
AGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAA
CCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAA
Protein sequenceShow/hide protein sequence
MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHK
PHHNKKVSLIFLLRFSYFDFSDV