; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G001820 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001820
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMyb-like transcription factor tcl2
Genome locationchr09:1905518..1905983
RNA-Seq ExpressionLsi09G001820
SyntenyLsi09G001820
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146038.1 transcription factor CPC-like isoform X2 [Momordica charantia]2.2e-2054.17Show/hide
Query:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG
        ME EAKK  KQP+KQ K R S+SEEVTSLEW++IQISEQEEDLI RMH+LVGD                                        RWDLIAG
Subjt:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG

Query:  RIPGRTAIGIERFWILKHGS
        RIPGRTA+ IERFWILKH S
Subjt:  RIPGRTAIGIERFWILKHGS

XP_030443023.1 transcription factor TRY-like isoform X1 [Syzygium oleosum]7.3e-1641.46Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDR-------FYLILSSKWFSL--FLRQIRFISPPPPFSFRTCFTTV----TLNFRWD
        ++ RKQ KR  +++EEV+S+EWEV++++EQEEDLI+RM++LVG+R       FY++L + +  +  F++    +  P    +  C   +     ++ RWD
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDR-------FYLILSSKWFSL--FLRQIRFISPPPPFSFRTCFTTV----TLNFRWD

Query:  LIAGRIPGRTAIGIERFWILKHG
        LIAGRIPGR    +ERFWI++HG
Subjt:  LIAGRIPGRTAIGIERFWILKHG

XP_038680402.1 transcription factor CPC-like [Tripterygium wilfordii]8.1e-1546.36Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        K+PRKQ K R + SEEV+S+EWE I+++EQEEDLI+RMHRLVGD                                        +WDLIAGRIPGR A  
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKHG
        IERFWI++HG
Subjt:  IERFWILKHG

XP_038725413.1 transcription factor CPC-like [Tripterygium wilfordii]4.0e-1444.55Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        K+PRKQ K R +NSEEV+S+EWE ++++EQEEDLI+RM+RLVGD                                        +WDLIAGRIPGR    
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKHG
        IERFWI++HG
Subjt:  IERFWILKHG

XP_038874276.1 transcription factor CPC-like [Benincasa hispida]7.8e-2660.83Show/hide
Query:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG
        ME EAKK AKQP+KQ KRRKSNSEEVTSLEWEVIQIS+QEEDLIHRMHRLVGD                                        RWDLIAG
Subjt:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG

Query:  RIPGRTAIGIERFWILKHGS
        RIPGRTA+ IERFWILKHGS
Subjt:  RIPGRTAIGIERFWILKHGS

TrEMBL top hitse value%identityAlignment
A0A061G715 Homeodomain-like superfamily protein7.4e-1444.55Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        ++P+KQ K  KS SEEV+S+EWE I+++EQEEDL++R++RLVGD                                        RWDLIAGRIPGRTA  
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKHG
        IERFWI++HG
Subjt:  IERFWILKHG

A0A2G5CTG8 SANT domain-containing protein2.8e-1345.45Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        K+ RKQ K  K   EEV+S+EWE IQ+S+QEEDLI+RMH+LVGD                                        RWDLIAGRIPGR    
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKHG
        IERFWI+KHG
Subjt:  IERFWILKHG

A0A6J1CXI2 transcription factor CPC-like isoform X21.1e-2054.17Show/hide
Query:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG
        ME EAKK  KQP+KQ K R S+SEEVTSLEW++IQISEQEEDLI RMH+LVGD                                        RWDLIAG
Subjt:  METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAG

Query:  RIPGRTAIGIERFWILKHGS
        RIPGRTA+ IERFWILKH S
Subjt:  RIPGRTAIGIERFWILKHGS

A0A7N2KV44 Uncharacterized protein4.3e-1451.82Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        K+PRKQ K R S SEEV+S+EW+ I+++EQEEDLI RM+RLVGD      S       LR  RF+           FT V     WDLIAGRIPGR    
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKHG
        IERFWI++HG
Subjt:  IERFWILKHG

B9N984 SANT domain-containing protein2.2e-1345.95Show/hide
Query:  NAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTA
        N ++ RKQ K   S SEEV+S+EWE I +SEQEEDLI+RMHRLVG+                                        RWDLIAGRIPGR A
Subjt:  NAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTA

Query:  IGIERFWILKH
          IERFWI+KH
Subjt:  IGIERFWILKH

SwissProt top hitse value%identityAlignment
O22059 Transcription factor CPC1.9e-1440.52Show/hide
Query:  EAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIP
        +A+K  K+ R+Q K + S SEEV+S+EWE +++SE+EEDLI RM++LVGD                                        RW+LIAGRIP
Subjt:  EAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIP

Query:  GRTAIGIERFWILKHG
        GRT   IER+W++KHG
Subjt:  GRTAIGIERFWILKHG

Q84RD1 MYB-like transcription factor ETC25.7e-1138.46Show/hide
Query:  QFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFW
        +F R + +SEEV+S+EWE I ++EQEEDLI RM+RLVG+                                        RWDLIAGR+ GR A  IER+W
Subjt:  QFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFW

Query:  ILKH
        I+++
Subjt:  ILKH

Q8GV05 Transcription factor TRY8.7e-1239.45Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        ++ RKQ K    +SEEV+S+EWE I ++EQEEDLI RM+RLVGD                                        RWDLIAGR+PGR    
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKH
        IER+WI+++
Subjt:  IERFWILKH

Q9LNI5 MYB-like transcription factor ETC16.7e-1241.84Show/hide
Query:  SNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFWILKH
        S+SEEV+SLEWE I ++++EEDLI RM++LVG+                                        RWDLIAGRIPGRTA  IERFW++K+
Subjt:  SNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFWILKH

Q9M157 MYB-like transcription factor ETC31.0e-1241.07Show/hide
Query:  KNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRT
        +  KQP K      S+SEEV+SLEWEV+ +S++EEDL+ RMH+LVGD                                        RW+LIAGRIPGRT
Subjt:  KNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRT

Query:  AIGIERFWILKH
        A  IERFW++K+
Subjt:  AIGIERFWILKH

Arabidopsis top hitse value%identityAlignment
AT1G01380.1 Homeodomain-like superfamily protein4.7e-1341.84Show/hide
Query:  SNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFWILKH
        S+SEEV+SLEWE I ++++EEDLI RM++LVG+                                        RWDLIAGRIPGRTA  IERFW++K+
Subjt:  SNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGIERFWILKH

AT2G46410.1 Homeodomain-like superfamily protein1.3e-1540.52Show/hide
Query:  EAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIP
        +A+K  K+ R+Q K + S SEEV+S+EWE +++SE+EEDLI RM++LVGD                                        RW+LIAGRIP
Subjt:  EAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIP

Query:  GRTAIGIERFWILKHG
        GRT   IER+W++KHG
Subjt:  GRTAIGIERFWILKHG

AT4G01060.1 CAPRICE-like MYB36.2e-1338.05Show/hide
Query:  KNAKQPR-KQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGR
        +  KQP+        S   EV+SLEWEV+ +S++EEDL+ RMH+LVGD                                        RW+LIAGRIPGR
Subjt:  KNAKQPR-KQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGR

Query:  TAIGIERFWILKH
        TA  IERFW++K+
Subjt:  TAIGIERFWILKH

AT4G01060.3 CAPRICE-like MYB37.3e-1441.07Show/hide
Query:  KNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRT
        +  KQP K      S+SEEV+SLEWEV+ +S++EEDL+ RMH+LVGD                                        RW+LIAGRIPGRT
Subjt:  KNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRT

Query:  AIGIERFWILKH
        A  IERFW++K+
Subjt:  AIGIERFWILKH

AT5G53200.1 Homeodomain-like superfamily protein6.2e-1339.45Show/hide
Query:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG
        ++ RKQ K    +SEEV+S+EWE I ++EQEEDLI RM+RLVGD                                        RWDLIAGR+PGR    
Subjt:  KQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIG

Query:  IERFWILKH
        IER+WI+++
Subjt:  IERFWILKH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCGAAGCTAAGAAGAATGCGAAACAGCCACGGAAACAGTTCAAGAGAAGGAAATCGAACTCGGAAGAAGTTACCAGTTTGGAATGGGAGGTCATTCAAATCAG
TGAGCAGGAGGAGGATCTCATTCATAGAATGCACCGGCTTGTTGGAGACAGGTTCTATCTCATTCTCTCTTCAAAATGGTTCTCTCTGTTTCTCCGACAAATTCGATTCA
TTTCTCCGCCGCCACCATTCTCGTTCCGAACATGTTTTACTACTGTTACATTGAACTTCAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGGACTGCAATAGGAATA
GAGAGGTTTTGGATATTGAAGCATGGTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCGAAGCTAAGAAGAATGCGAAACAGCCACGGAAACAGTTCAAGAGAAGGAAATCGAACTCGGAAGAAGTTACCAGTTTGGAATGGGAGGTCATTCAAATCAG
TGAGCAGGAGGAGGATCTCATTCATAGAATGCACCGGCTTGTTGGAGACAGGTTCTATCTCATTCTCTCTTCAAAATGGTTCTCTCTGTTTCTCCGACAAATTCGATTCA
TTTCTCCGCCGCCACCATTCTCGTTCCGAACATGTTTTACTACTGTTACATTGAACTTCAGGTGGGATTTGATCGCGGGACGAATTCCAGGACGGACTGCAATAGGAATA
GAGAGGTTTTGGATATTGAAGCATGGTTCCTGA
Protein sequenceShow/hide protein sequence
METEAKKNAKQPRKQFKRRKSNSEEVTSLEWEVIQISEQEEDLIHRMHRLVGDRFYLILSSKWFSLFLRQIRFISPPPPFSFRTCFTTVTLNFRWDLIAGRIPGRTAIGI
ERFWILKHGS