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Lsi09G001900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationchr09:1972270..1972869
RNA-Seq ExpressionLsi09G001900
SyntenyLsi09G001900
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]7.7e-1679.45Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+ F GV   V  +LAML  A AQSL+PAQPPA SDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]2.7e-1679.45Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+ F GV F V  +LAM+  A AQSL+PAQPPA SDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]1.0e-2086.49Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAYVLMLLALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]9.7e-1981.08Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAY LMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]4.0e-1271.05Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        M VVAY     GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAYVLMLLAL+LTYIIH A+L ISL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein5.0e-2186.49Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAYVLMLLALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

A0A1S3ATI9 arabinogalactan peptide 22-like4.7e-1981.08Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAY LMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

A0A5D3C2F1 Arabinogalactan peptide 22-like4.7e-1981.08Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAY LMLLALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

A0A6J1CXM0 arabinogalactan peptide 22-like2.1e-1173.77Show/hide
Query:  VLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V FV+   L + + A  +S+SPAQP ATSDGTSIDQGIAY LMLLALVLTYIIHSADLSIS
Subjt:  VLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A6J1K4A3 arabinogalactan peptide 22-like3.3e-1272.73Show/hide
Query:  MAVVAY-KVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL
        M VVAY KV + GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAYVLMLLAL+LTYIIH A+L ISL
Subjt:  MAVVAY-KVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.8e-0855.71Show/hide
Query:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

Q8L9T8 Arabinogalactan protein 413.6e-0863.79Show/hide
Query:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH
        F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 227.5e-0651.52Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH
        MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAYVLM++AL LTY IH
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 202.8e-0861.29Show/hide
Query:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.0e-0955.71Show/hide
Query:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

AT3G61640.1 arabinogalactan protein 202.0e-0961.29Show/hide
Query:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 412.6e-0963.79Show/hide
Query:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH
        F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 225.3e-0751.52Show/hide
Query:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH
        MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAYVLM++AL LTY IH
Subjt:  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACC
TCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTT
TATAA
mRNA sequenceShow/hide mRNA sequence
CATAGCCCCATTGATTGAGAGGCAGACCGCCATTGCCACGCCGTCGTCGTCTTCGTTGAAACTGTCAATTGGTGGTGGTTTGGCTAGCCTCCTCCCCTTTTGACAGTTTC
AAATTATTTATCAATTCTCAGCTTAGATACATTACTTTTAATTTTCTAATAATATCTCTCTCTCTGCTGCGCCTCTCCAGAGCTTTTCTCTGATCAACTTCATCCATTTC
TGAGAGGCGTTGCAGATAGAGATTTCCATTCATTTTCACTTATAACTTTCTCCTTTTTCTTTTCAACAATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTA
TTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACCTCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGC
CTATGTATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTTTATAA
Protein sequenceShow/hide protein sequence
MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYVLMLLALVLTYIIHSADLSISL