; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G001910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G001910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationchr09:1974709..1975382
RNA-Seq ExpressionLsi09G001910
SyntenyLsi09G001910
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1576.71Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        MAVVA K+ F GV + V  +LAML  A AQSL+PAQPPA SDGTSIDQG+AYVLM LALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-1575.34Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        MAVVA K+ F GV   V  +LAM+  A AQSL+PAQPPA SDGTSIDQG+AYVLM LALVLTYIIHSADLSIS
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]5.7e-1981.08Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        MAVVA KV FGG+L  VAL+L  LSSA AQSLSPAQPPAT DGTSIDQG+AYVLM LALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]5.3e-1775.68Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        MAVVA K+ F G+L  VAL+L  LS A AQSLSPAQPPATSDGTSIDQG+AY LM LALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]3.0e-1269.74Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        M VVAY     GVL+AVA +LAML  ASA   SLSPAQPP  SDGTS+DQG+AYVLM LAL+LTYIIH A+L ISL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein2.8e-1981.08Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        MAVVA KV FGG+L  VAL+L  LSSA AQSLSPAQPPAT DGTSIDQG+AYVLM LALVLTYIIHSADL +SL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

A0A1S3ATI9 arabinogalactan peptide 22-like2.6e-1775.68Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        MAVVA K+ F G+L  VAL+L  LS A AQSLSPAQPPATSDGTSIDQG+AY LM LALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

A0A5D3C2F1 Arabinogalactan peptide 22-like2.6e-1775.68Show/hide
Query:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        MAVVA K+ F G+L  VAL+L  LS A AQSLSPAQPPATSDGTSIDQG+AY LM LALVLTYIIHSAD  +SL
Subjt:  MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

A0A6J1CXM0 arabinogalactan peptide 22-like1.8e-1066.18Show/hide
Query:  GVLLAVAL------LLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        G+L+AVA+       L + + A  +S+SPAQP ATSDGTSIDQG+AY LM LALVLTYIIHSADLSIS
Subjt:  GVLLAVAL------LLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

A0A6J1K4A3 arabinogalactan peptide 22-like2.5e-1271.43Show/hide
Query:  MAVVAY-KVSFGGVLLAVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL
        M VVAY KV + GVL+AVA +LAML  ASA   SLSPAQPP  SDGTS+DQG+AYVLM LAL+LTYIIH A+L ISL
Subjt:  MAVVAY-KVSFGGVLLAVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 163.6e-0855.71Show/hide
Query:  VAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        +A + S  G  L   +   +LS A AQSL+PA P  TSDGTSIDQG+AY+LM +ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

Q8L9T8 Arabinogalactan protein 414.0e-0760.34Show/hide
Query:  FGGVLLAVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIH
        F GV   V+++ A +L  A AQS +PA P  TSDGT+IDQG+AYVLM +ALVLTY+IH
Subjt:  FGGVLLAVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIH

Q9FK16 Arabinogalactan protein 227.5e-0657.41Show/hide
Query:  LLAVALLLAMLSSASAQSLSPAQPPA-TSDGTSIDQGVAYVLMFLALVLTYIIH
        +LAV ++++++    AQS S +  PA TSDGTSIDQG+AYVLM +AL LTY IH
Subjt:  LLAVALLLAMLSSASAQSLSPAQPPA-TSDGTSIDQGVAYVLMFLALVLTYIIH

Q9M373 Arabinogalactan protein 201.1e-0759.68Show/hide
Query:  VLLAVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        V+   A + A++S  A AQSL+PA P  TSDGTSIDQG+AY+LM +ALVLTY+IH  D S S
Subjt:  VLLAVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.6e-0955.71Show/hide
Query:  VAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        +A + S  G  L   +   +LS A AQSL+PA P  TSDGTSIDQG+AY+LM +ALVLTY+IH  D S S
Subjt:  VAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

AT3G61640.1 arabinogalactan protein 207.5e-0959.68Show/hide
Query:  VLLAVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS
        V+   A + A++S  A AQSL+PA P  TSDGTSIDQG+AY+LM +ALVLTY+IH  D S S
Subjt:  VLLAVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 412.8e-0860.34Show/hide
Query:  FGGVLLAVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIH
        F GV   V+++ A +L  A AQS +PA P  TSDGT+IDQG+AYVLM +ALVLTY+IH
Subjt:  FGGVLLAVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIH

AT5G53250.1 arabinogalactan protein 225.3e-0757.41Show/hide
Query:  LLAVALLLAMLSSASAQSLSPAQPPA-TSDGTSIDQGVAYVLMFLALVLTYIIH
        +LAV ++++++    AQS S +  PA TSDGTSIDQG+AYVLM +AL LTY IH
Subjt:  LLAVALLLAMLSSASAQSLSPAQPPA-TSDGTSIDQGVAYVLMFLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTACTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAGTCTTTGTCTCCGGCTCAACC
TCCTGCTACTAGTGATGGGACAAGCATAGATCAAGGGGTTGCCTATGTATTGATGTTCTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCAGACCTTTCTATCAGTT
TATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTACTTGCTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAGTCTTTGTCTCCGGCTCAACC
TCCTGCTACTAGTGATGGGACAAGCATAGATCAAGGGGTTGCCTATGTATTGATGTTCTTGGCCTTGGTGCTCACCTACATTATCCATTCAGCAGACCTTTCTATCAGTT
TATAAATCCATCTATAAAAAGAACTCAGATTCAGATTTTACCAGTTCAAATGGGGTTGAAGAATTTATCATAGAGAATATGATTTTTTTTTTAATATGATCTCATGGACG
GAACTTTACATGTAAATGAATGCAATGATAACTTCTTTTACCTCAATGGTGGCTTTTGTCCTATACATTATCCATTACCGATTCTGGTTCTTTTTAAATCAAACTGTTGT
TTAATAAGTCTTTAATTAGTTGAGAAAATATAAATCATGAAAATGATACATAAACAAAAACTGTATAAAGTTAACAAGATTAACAAGATTTCTATCTTAATGAGG
Protein sequenceShow/hide protein sequence
MAVVAYKVSFGGVLLAVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGVAYVLMFLALVLTYIIHSADLSISL