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Lsi09G002280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G002280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 1
Genome locationchr09:2384944..2387064
RNA-Seq ExpressionLsi09G002280
SyntenyLsi09G002280
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001694 - NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY39165.1 hypothetical protein CUMW_042270 [Citrus unshiu]4.2e-0951.56Show/hide
Query:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        R  +A++  K+ +  DS    ++ KE+A+P  AF KPPPLPP+LGPL   SLLET+ SRDG+DD
Subjt:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

KAA0042731.1 hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa]1.8e-2087.1Show/hide
Query:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        SL S++Q+QGMKNDSEGESVV KE ADPIAAFSKPPPLPPLLGPLAV SLLETYLS DGNDD
Subjt:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

KAE8647849.1 hypothetical protein Csa_000256 [Cucumis sativus]1.5e-1988.14Show/hide
Query:  SSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        S +Q+QGMKNDSEGESVV KE ADPIAAFS+PPPLPPLLGPLAVFSLLETYLS DGNDD
Subjt:  SSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

KDO76314.1 hypothetical protein CISIN_1g034695mg [Citrus sinensis]4.2e-0951.56Show/hide
Query:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        R  +A++  K+ +  DS    ++ KE+A+P  AF KPPPLPP+LGPL   SLLET+ SRDG+DD
Subjt:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

KZN11958.1 hypothetical protein DCAR_004614 [Daucus carota subsp. sativus]6.5e-1059.65Show/hide
Query:  SIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND
        S+ K+ + NDS GE +++KE  DPI AFSKPPPLPP++GPL V SLL++Y SRD +D
Subjt:  SIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND

TrEMBL top hitse value%identityAlignment
A0A067G9P5 Uncharacterized protein2.0e-0951.56Show/hide
Query:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        R  +A++  K+ +  DS    ++ KE+A+P  AF KPPPLPP+LGPL   SLLET+ SRDG+DD
Subjt:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

A0A0A0KKH2 Uncharacterized protein4.0e-2187.1Show/hide
Query:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        SL S++Q+QGMKNDSEGESVV KE ADPIAAFS+PPPLPPLLGPLAVFSLLETYLS DGNDD
Subjt:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

A0A166JAA1 Uncharacterized protein3.2e-1059.65Show/hide
Query:  SIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND
        S+ K+ + NDS GE +++KE  DPI AFSKPPPLPP++GPL V SLL++Y SRD +D
Subjt:  SIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND

A0A2H5NHN6 Uncharacterized protein2.0e-0951.56Show/hide
Query:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        R  +A++  K+ +  DS    ++ KE+A+P  AF KPPPLPP+LGPL   SLLET+ SRDG+DD
Subjt:  RSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

A0A5A7TME5 Uncharacterized protein8.9e-2187.1Show/hide
Query:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD
        SL S++Q+QGMKNDSEGESVV KE ADPIAAFSKPPPLPPLLGPLAV SLLETYLS DGNDD
Subjt:  SLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGNDD

SwissProt top hitse value%identityAlignment
P31839 NADH-ubiquinone oxidoreductase chain 11.1e-0789.66Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL
        MAFVQRRKGPDVVGSFGLLQPLADGL+ +
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL

P48898 NADH-ubiquinone oxidoreductase chain 13.8e-0561.76Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFLTSNLL
        MA +QRRKGP++VG FGLLQPLADGL+      +
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFLTSNLL

P92558 NADH-ubiquinone oxidoreductase chain 18.3e-0864.58Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADGL+ +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP

Q01148 NADH-ubiquinone oxidoreductase chain 18.3e-0864.58Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADGL+ +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP

Q01300 NADH-ubiquinone oxidoreductase chain 11.1e-0789.66Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL
        MAFVQRRKGPDVVGSFGLLQPLADGL+ +
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL

Arabidopsis top hitse value%identityAlignment
AT2G07785.1 NADH dehydrogenase family protein2.9e-0862.5Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADG + +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP

AT4G23493.1 unknown protein4.4e-0437.25Show/hide
Query:  KNDSEGESV-VIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND
        +N SE E++  ++E  +P+ A S+PPP  P +GP+ ++SLL+++ S    D
Subjt:  KNDSEGESV-VIKEDADPIAAFSKPPPLPPLLGPLAVFSLLETYLSRDGND

ATMG00516.1 NADH dehydrogenase 1C2.9e-0862.5Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADG + +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP

ATMG01120.1 NADH dehydrogenase 1B2.9e-0862.5Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADG + +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP

ATMG01275.1 NADH dehydrogenase 1A2.9e-0862.5Show/hide
Query:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP
        MAFVQRRKGPDVVGSFGLLQPLADG + +       +S   FLF   P
Subjt:  MAFVQRRKGPDVVGSFGLLQPLADGLEFL-------TSNLLFLFPKVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTGTGCAACGTCGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGGAATTTTTAACTTCAAATCTCCTCTTTCTTTT
CCCGAAAGTTCCCCCCTCCCTAATTCTAAAACAAGCAACTTCGATTCGCGCCAATCTCAACACCGGACCGGCGACGATTGCAGAACATCGGAGTAGTCTGGCTTCATCAA
TACAAAAGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCGGTGGTTATCAAAGAGGATGCAGACCCAATTGCAGCGTTCAGTAAGCCTCCACCACTCCCTCCCCTTCTT
GGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAG
mRNA sequenceShow/hide mRNA sequence
TGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGGAATTTTTAACT
TCAAATCTCCTCTTTCTTTTCCCGAAAGTTCCCCCCTCCCTAATTCTAAAACAAGCAACTTCGATTCGCGCCAATCTCAACACCGGACCGGCGACGATTGCAGAACATCG
GAGTAGTCTGGCTTCATCAATACAAAAGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCGGTGGTTATCAAAGAGGATGCAGACCCAATTGCAGCGTTCAGTAAGCCTC
CACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAGAAGGGGATGTTTTGTATGGGTACTATC
TTTTCCATGTCCACGAATAGAATAAAGCTTTGTGTGTGTATATGATGTATCCTTTACTTGAAAGACTTTATAACTTGATGTAAAAATTTGAGTACATTAATATACAGTTG
AGCCCAAAAGTGTATGAAGGTTAGATAGCTCTTCAAAAAGCTGTCCAAGAGACGCTTGAAGAGAATTATACAGATCTTTGACATCCACATTACCCAACGTTGTTGAGAAA
CTTTTATCAGCCCTACAGGAGACATAGTTCATGTATCTTTAATGTTTAGTAAGAAGCTTTTGCTCACGGAGATCTATGGCATAAGGTATTAAATTTAACTTACATTCTGG
AATTGCTGGATACGTAGCAAGCAATAAAGTCACGACCTTCATTATAGCCTGATATTAGTTACAGAAAAAGCCCCATCAGACCAACAAATTGAACATTTGTTAATACACAC
AATTTACTTTGATTTCAATTGAAT
Protein sequenceShow/hide protein sequence
MAFVQRRKGPDVVGSFGLLQPLADGLEFLTSNLLFLFPKVPPSLILKQATSIRANLNTGPATIAEHRSSLASSIQKQGMKNDSEGESVVIKEDADPIAAFSKPPPLPPLL
GPLAVFSLLETYLSRDGNDD