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Lsi09G002460 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G002460
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin efflux carrier family protein
Genome locationchr09:2583818..2586840
RNA-Seq ExpressionLsi09G002460
SyntenyLsi09G002460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS90123.1 Os04g0521001 [Oryza sativa Japonica Group]1.5e-2747.09Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +D+ ++G++LG+G GEDGVDE+EG DDL  EA A GVA  + V    + HV   LE L +  AADGA+AL YDVE+ + +   +RQE+P+RHRR++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNAD------GGAFRRSSA-----DSHHRQDGDVEEQESSHKLRDSGSVKRP
         AGG VDE EDHAAE P DA +AD      GG   R        D  HR   DVEE++  H+L D  +V+ P
Subjt:  DAGGTVDEGEDHAAESPSDALNAD------GGAFRRSSA-----DSHHRQDGDVEEQESSHKLRDSGSVKRP

BAT01305.1 Os07g0448600, partial [Oryza sativa Japonica Group]1.0e-2847.93Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +DM ++G++LG+G GEDGV E+EG DDL  EA A GVA G+ V    +  V R LE L +  AADGA+AL +DVE G+ +G  +RQE+ +RHRR++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
        DAGG V + EDHAAE P DA +A   A R        R      HR   DV+EQ+  H+L D G+V+RP
Subjt:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

KAB8096440.1 hypothetical protein EE612_024891, partial [Oryza sativa]4.0e-3352.17Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +++ + G+ LG+G GEDGVDE+EG DDL  EA A GVA  D+V       V   LEAL D GA DGA+ALH+ VE G GEGQ   +E+ +   R++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
        DAGG VDEGEDHAAE P DAL+ADGGA      D H  +DGDV+E+E  H+L D  +V+ P
Subjt:  DAGGTVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

KAB8096443.1 hypothetical protein EE612_024891, partial [Oryza sativa]2.4e-2554.84Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +++ + G+ LG+G GEDGVDE+EG DDL  EA A GVA  D+V       V   LEAL D GA DGA+ALH+ VE G GEGQ   +E+ +   R++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNAD
        DAGG VDEGEDHAAE P DAL+AD
Subjt:  DAGGTVDEGEDHAAESPSDALNAD

KAB8105260.1 hypothetical protein EE612_038934, partial [Oryza sativa]1.4e-3049.7Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +DM ++G++LG+G GEDGVDE+EG DDLS EA A GVA G+ V    +  V R LE L +  AADGA+AL +DVE G+ +G  +RQE+ +RHRR++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
        DAGG V + EDHAAE P DA +A   A R        R    S HR   DV+EQ+  H+L D G+V+RP
Subjt:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

TrEMBL top hitse value%identityAlignment
A0A0E0DH09 Uncharacterized protein4.6e-3555.41Show/hide
Query:  ISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTGDAGG
        + G+ LG+G GEDGVDE+EG DDL  EA A GVA  D+V       V   LEAL D GAADGA+ALH+ VE G GEGQ   +E+ +   R++   GDAGG
Subjt:  ISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTGDAGG

Query:  TVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
         VDEGEDHAAE P DAL+ADGGA      D H  +DGDVEE+E  H+L D G+V+ P
Subjt:  TVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

A0A0E0DH10 Uncharacterized protein4.6e-3555.41Show/hide
Query:  ISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTGDAGG
        + G+ LG+G GEDGVDE+EG DDL  EA A GVA  D+V       V   LEAL D GAADGA+ALH+ VE G GEGQ   +E+ +   R++   GDAGG
Subjt:  ISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTGDAGG

Query:  TVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
         VDEGEDHAAE P DAL+ADGGA      D H  +DGDVEE+E  H+L D G+V+ P
Subjt:  TVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

A0A0P0WCX2 Os04g0521001 protein7.1e-2847.09Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +D+ ++G++LG+G GEDGVDE+EG DDL  EA A GVA  + V    + HV   LE L +  AADGA+AL YDVE+ + +   +RQE+P+RHRR++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNAD------GGAFRRSSA-----DSHHRQDGDVEEQESSHKLRDSGSVKRP
         AGG VDE EDHAAE P DA +AD      GG   R        D  HR   DVEE++  H+L D  +V+ P
Subjt:  DAGGTVDEGEDHAAESPSDALNAD------GGAFRRSSA-----DSHHRQDGDVEEQESSHKLRDSGSVKRP

A0A0P0WDN7 Os04g0559750 protein (Fragment)1.9e-3352.17Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +++ + G+ LG+G GEDGVDE+EG DDL  EA A GVA  D+V       V   LEAL D GA DGA+ALH+ VE G GEGQ   +E+ +   R++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
        DAGG VDEGEDHAAE P DAL+ADGGA      D H  +DGDV+E+E  H+L D  +V+ P
Subjt:  DAGGTVDEGEDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

A0A0P0X5E6 Os07g0448600 protein (Fragment)4.9e-2947.93Show/hide
Query:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG
        +DM ++G++LG+G GEDGV E+EG DDL  EA A GVA G+ V    +  V R LE L +  AADGA+AL +DVE G+ +G  +RQE+ +RHRR++   G
Subjt:  KDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTG

Query:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP
        DAGG V + EDHAAE P DA +A   A R        R      HR   DV+EQ+  H+L D G+V+RP
Subjt:  DAGGTVDEGEDHAAESPSDALNADGGAFR--------RSSADSHHRQDGDVEEQESSHKLRDSGSVKRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGACATGAGAATCTCTGGCATTTCTCTTGGCATCGGTAGCGGAGAAGACGGTGTAGACGAGAACGAAGGTACCGATGATCTCAGCACCGAGGCCGCTGCCTTTGG
TGTAGCCAGAGGCGACGAAGTTCGCACCACCGAGCTTCTGCACGTAGGTAGACCCCTCGAAGCCCTTCACGACACCGGCGCCGCAGATGGCGCCAAGGCATTGCATTATG
ATGTAGAATATGGCTCTGGTGAGGGACAGTTTTCTCGCCAGGAAAAGCCCAAACGTCACCGCCGGATTAATGGTTTTACCGGAGATGCCGGCGGTACAGTAGACGAGGGC
GAAGATCATGCCGCCGAAAGCCCAAGCGATGCCCTGAATGCCGACGGTGGAGCATTTCGACGGAGCTCGGCTGACTCCCATCACCGTCAAGATGGTGATGTAGAGGAACA
AGAAAGTAGCCACAAACTCCGCGATTCCGGCTCTGTAAAACGACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGACATGAGAATCTCTGGCATTTCTCTTGGCATCGGTAGCGGAGAAGACGGTGTAGACGAGAACGAAGGTACCGATGATCTCAGCACCGAGGCCGCTGCCTTTGG
TGTAGCCAGAGGCGACGAAGTTCGCACCACCGAGCTTCTGCACGTAGGTAGACCCCTCGAAGCCCTTCACGACACCGGCGCCGCAGATGGCGCCAAGGCATTGCATTATG
ATGTAGAATATGGCTCTGGTGAGGGACAGTTTTCTCGCCAGGAAAAGCCCAAACGTCACCGCCGGATTAATGGTTTTACCGGAGATGCCGGCGGTACAGTAGACGAGGGC
GAAGATCATGCCGCCGAAAGCCCAAGCGATGCCCTGAATGCCGACGGTGGAGCATTTCGACGGAGCTCGGCTGACTCCCATCACCGTCAAGATGGTGATGTAGAGGAACA
AGAAAGTAGCCACAAACTCCGCGATTCCGGCTCTGTAAAACGACCATGA
Protein sequenceShow/hide protein sequence
MKDMRISGISLGIGSGEDGVDENEGTDDLSTEAAAFGVARGDEVRTTELLHVGRPLEALHDTGAADGAKALHYDVEYGSGEGQFSRQEKPKRHRRINGFTGDAGGTVDEG
EDHAAESPSDALNADGGAFRRSSADSHHRQDGDVEEQESSHKLRDSGSVKRP