; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G002830 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G002830
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontetraspanin-10
Genome locationchr09:2966783..2968274
RNA-Seq ExpressionLsi09G002830
SyntenyLsi09G002830
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009506 - plasmodesma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR044991 - Tetraspani, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042779.1 tetraspanin-10 isoform X2 [Cucumis melo var. makuwa]7.8e-6295.04Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPS+CGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

KAE8647864.1 hypothetical protein Csa_000384 [Cucumis sativus]3.5e-6295.87Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

XP_004143924.1 tetraspanin-10 [Cucumis sativus]3.5e-6295.87Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

XP_022928822.1 tetraspanin-10-like isoform X1 [Cucurbita moschata]6.6e-6193.39Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNTDNWM L+SCLVKSEDCNNLSKRYKTLKQYKLAKLTP+EAGCCRPPSECGYPAVNASYYDLSFHPV+SNHDCKLYKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNV+LFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

XP_038876134.1 tetraspanin-10 [Benincasa hispida]2.3e-6195.04Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT++WMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTP+EAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

TrEMBL top hitse value%identityAlignment
A0A0A0KNY7 Uncharacterized protein1.7e-6295.87Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

A0A1S3ATI6 tetraspanin-101.7e-6295.87Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

A0A5A7TN38 Tetraspanin-10 isoform X23.8e-6295.04Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT+NWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPS+CGYPAVNASYYDLSFHPVNSNHDCK+YKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNVILFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

A0A6J1EL06 tetraspanin-10-like isoform X13.2e-6193.39Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNTDNWM L+SCLVKSEDCNNLSKRYKTLKQYKLAKLTP+EAGCCRPPSECGYPAVNASYYDLSFHPV+SNHDCKLYKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNV+LFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

A0A6J1EQ67 tetraspanin-10-like isoform X23.2e-6193.39Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNTDNWM L+SCLVKSEDCNNLSKRYKTLKQYKLAKLTP+EAGCCRPPSECGYPAVNASYYDLSFHPV+SNHDCKLYKNSKAVKCYDCDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVL
        QYMKTEW LVAIFNV+LFVVL
Subjt:  QYMKTEWLLVAIFNVILFVVL

SwissProt top hitse value%identityAlignment
F4I214 Tetraspanin-103.3e-5573.19Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT NW+RLKSCLVKSE C  LSK+YKT+KQ K A+LTP+EAGCCRPPSECGYPAVNASYYDLSFH ++SN DCKLYKN + +KCY+CDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL
        QYMKTEW LVAIFNV+LFVVL  ++L  +    Q  GL
Subjt:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL

Q8S8Q6 Tetraspanin-81.1e-1835.83Show/hide
Query:  LNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAK--LTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQ
        + N  NW +++SCLV+S+ C+ L  ++  +      K  LT +++GCC+P  ECG+  VN + +  +    ++N DC+ + N+K   C+DC SCKAG+  
Subjt:  LNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAK--LTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQ

Query:  YMKTEWLLVAIFNVILFVVL
         +K+ W  VAI N++  V L
Subjt:  YMKTEWLLVAIFNVILFVVL

Q9FIQ5 Protein TORNADO 23.6e-1735.71Show/hide
Query:  WMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQYMKTEWLL
        W R+++CL  +  C  L++RY   + +  A L P+++GCC+PP++CG+  VN +Y+ +S   ++++ DC  + N +   CY CDSCKAG+   +K +WL 
Subjt:  WMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQYMKTEWLL

Query:  VAIFNVILFVVL
          IF ++  + L
Subjt:  VAIFNVILFVVL

Q9M1E7 Tetraspanin-31.0e-1932.26Show/hide
Query:  DELNNTDNWMRLKSCLVKSEDCNNLSKRY----KTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKA
        D +++   W ++ SCL  S  C  + + +    +T   + L +L+P+E+GCC+PP++CG+  VN + +D     +  N DC ++ N +++ CY C SCKA
Subjt:  DELNNTDNWMRLKSCLVKSEDCNNLSKRY----KTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKA

Query:  GVAQYMKTEWLLVAIFNVILFVVL
        GV   +K  W  V++ N+++ ++L
Subjt:  GVAQYMKTEWLLVAIFNVILFVVL

Q9ZUN5 Tetraspanin-22.7e-1736.97Show/hide
Query:  NTDNWMRLKSCLVKSEDCNNLSKRYKTLKQ-YKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVN--SNHDCKLYKNSKAVKCYDCDSCKAGVAQY
        ++ NW RL++CL  +  C  L++ + T  Q +  +K+TP+++GCC+PP+ CGY  VN +   L  +P N  ++ DC L+ N ++  CY+C+SCKAG+   
Subjt:  NTDNWMRLKSCLVKSEDCNNLSKRYKTLKQ-YKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVN--SNHDCKLYKNSKAVKCYDCDSCKAGVAQY

Query:  MKTEWLLVAIFNVILFVVL
        ++ EW    +  +I  VVL
Subjt:  MKTEWLLVAIFNVILFVVL

Arabidopsis top hitse value%identityAlignment
AT1G63260.1 tetraspanin102.3e-5673.19Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT NW+RLKSCLVKSE C  LSK+YKT+KQ K A+LTP+EAGCCRPPSECGYPAVNASYYDLSFH ++SN DCKLYKN + +KCY+CDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL
        QYMKTEW LVAIFNV+LFVVL  ++L  +    Q  GL
Subjt:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL

AT1G63260.2 tetraspanin103.2e-5380Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT NW+RLKSCLVKSE C  LSK+YKT+KQ K A+LTP+EAGCCRPPSECGYPAVNASYYDLSFH ++SN DCKLYKN + +KCY+CDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNV
        QYMKTEW LVAIFNV
Subjt:  QYMKTEWLLVAIFNV

AT1G63260.3 tetraspanin102.3e-5673.19Show/hide
Query:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA
        L +LNNT NW+RLKSCLVKSE C  LSK+YKT+KQ K A+LTP+EAGCCRPPSECGYPAVNASYYDLSFH ++SN DCKLYKN + +KCY+CDSCKAGVA
Subjt:  LDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVA

Query:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL
        QYMKTEW LVAIFNV+LFVVL  ++L  +    Q  GL
Subjt:  QYMKTEWLLVAIFNVILFVVLSDAVLDEKL---QEIGL

AT2G23810.1 tetraspanin87.9e-2035.83Show/hide
Query:  LNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAK--LTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQ
        + N  NW +++SCLV+S+ C+ L  ++  +      K  LT +++GCC+P  ECG+  VN + +  +    ++N DC+ + N+K   C+DC SCKAG+  
Subjt:  LNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAK--LTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKAGVAQ

Query:  YMKTEWLLVAIFNVILFVVL
         +K+ W  VAI N++  V L
Subjt:  YMKTEWLLVAIFNVILFVVL

AT3G45600.1 tetraspanin37.1e-2132.26Show/hide
Query:  DELNNTDNWMRLKSCLVKSEDCNNLSKRY----KTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKA
        D +++   W ++ SCL  S  C  + + +    +T   + L +L+P+E+GCC+PP++CG+  VN + +D     +  N DC ++ N +++ CY C SCKA
Subjt:  DELNNTDNWMRLKSCLVKSEDCNNLSKRY----KTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNSKAVKCYDCDSCKA

Query:  GVAQYMKTEWLLVAIFNVILFVVL
        GV   +K  W  V++ N+++ ++L
Subjt:  GVAQYMKTEWLLVAIFNVILFVVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTCAAAGTTCGGTACTCGTGCATCGATAAGCTGGCATTTCTATGGACTGATATTTTTTCCCCTTCTCTTCCCCTTGATGAGCTTAATAATACTGATAATTGGAT
GCGTCTGAAAAGCTGTCTCGTCAAATCCGAGGATTGCAATAATCTTTCAAAAAGATACAAGACTCTCAAGCAGTACAAATTGGCAAAGCTGACGCCAATGGAAGCGGGTT
GTTGCAGACCCCCATCTGAATGTGGTTATCCTGCTGTTAATGCATCATATTATGACTTGAGCTTTCATCCTGTCAATTCAAACCATGATTGCAAACTATACAAGAATTCC
AAGGCAGTCAAGTGTTATGATTGTGATTCGTGCAAGGCTGGAGTTGCACAGTACATGAAAACTGAATGGCTATTGGTTGCGATCTTCAATGTCATTCTATTTGTTGTCTT
GTCGGATGCTGTGCTAGACGAAAAGCTGCAAGAAATCGGTCTAAAGGTTAGTGGTACATCGGTTGCGGTCAGCAGACTGCTTAAACATCAAAACAGACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCTCAAAGTTCGGTACTCGTGCATCGATAAGCTGGCATTTCTATGGACTGATATTTTTTCCCCTTCTCTTCCCCTTGATGAGCTTAATAATACTGATAATTGGAT
GCGTCTGAAAAGCTGTCTCGTCAAATCCGAGGATTGCAATAATCTTTCAAAAAGATACAAGACTCTCAAGCAGTACAAATTGGCAAAGCTGACGCCAATGGAAGCGGGTT
GTTGCAGACCCCCATCTGAATGTGGTTATCCTGCTGTTAATGCATCATATTATGACTTGAGCTTTCATCCTGTCAATTCAAACCATGATTGCAAACTATACAAGAATTCC
AAGGCAGTCAAGTGTTATGATTGTGATTCGTGCAAGGCTGGAGTTGCACAGTACATGAAAACTGAATGGCTATTGGTTGCGATCTTCAATGTCATTCTATTTGTTGTCTT
GTCGGATGCTGTGCTAGACGAAAAGCTGCAAGAAATCGGTCTAAAGGTTAGTGGTACATCGGTTGCGGTCAGCAGACTGCTTAAACATCAAAACAGACCGTAGTCCTCTT
GTGCCATGTAAGTGATACCTGTTGGAAGTAGAAATTTTTAGGAAAAGAATGAAGTTTGTCAGTCAGTTTGTGTAATATATGCAGCCAGCCATGTTTGTATGTAAAAAGTT
TGTTCTTTAACTAGTACAGTGACTAATATTCGTTCTGGTATTGAACTGTATTTCGACCATGAACCATTATTTGTCCACAGAATGCTTACTTGGTTCTCGACCGTGAAAAC
CGTTCCCAAACTTCATCTAGTTGCTGTATAATCCATCTGTTATTAAATTGTATATGATGTATCATTCCGTTATGCTACCCGACACAAGAAAAAGGTTGTTCTTTCT
Protein sequenceShow/hide protein sequence
MILKVRYSCIDKLAFLWTDIFSPSLPLDELNNTDNWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKLYKNS
KAVKCYDCDSCKAGVAQYMKTEWLLVAIFNVILFVVLSDAVLDEKLQEIGLKVSGTSVAVSRLLKHQNRP