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Lsi09G002840 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G002840
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontetraspanin-10
Genome locationchr09:2968356..2969932
RNA-Seq ExpressionLsi09G002840
SyntenyLsi09G002840
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009506 - plasmodesma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018499 - Tetraspanin/Peripherin
IPR044991 - Tetraspani, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647864.1 hypothetical protein Csa_000384 [Cucumis sativus]3.8e-4095.74Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +  FLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGH VAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

XP_004143924.1 tetraspanin-10 [Cucumis sativus]3.8e-4095.74Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +  FLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGH VAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

XP_022159794.1 tetraspanin-10 [Momordica charantia]7.3e-3992.55Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LAILVIIFGIWMG+HHDGCRKSLT PVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITL+GILVFTVLAFIVTNNGSGHSVAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

XP_022957681.1 tetraspanin-10-like [Cucurbita moschata]2.5e-3993.62Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LAILV+IFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGF GALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

XP_038876134.1 tetraspanin-10 [Benincasa hispida]1.7e-4095.74Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +  FLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHS+AGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

TrEMBL top hitse value%identityAlignment
A0A0A0KNY7 Uncharacterized protein1.9e-4095.74Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +  FLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGH VAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

A0A1S3ATI6 tetraspanin-101.9e-4095.74Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +  FLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGH VAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

A0A6J1E3D2 tetraspanin-103.5e-3992.55Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LAILVIIFGIWMG+HHDGCRKSLT PVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITL+GILVFTVLAFIVTNNGSGHSVAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

A0A6J1GZX1 tetraspanin-10-like1.2e-3993.62Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LAILV+IFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGF GALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

A0A6J1K8B5 tetraspanin-10-like1.2e-3993.62Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LAILV+IFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGF GALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

SwissProt top hitse value%identityAlignment
F4I214 Tetraspanin-101.9e-2968.09Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LA+ VIIFG+WM TH+DGCR+SLT PV+ LGGFIF++SI+GFLGA K +  LLWIYL +L I L+ ILVFTVLAFIVTNNGSGH+  GLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

Q8S8Q6 Tetraspanin-83.1e-0835.96Show/hide
Query:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG
        L+I ++  GIW+       C + L  PV+ LG F+ VV+I G +G+    + LLW+YL ++ + ++ +   TV AF+VTN G+G ++ G
Subjt:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG

Q9M0B7 Tetraspanin-93.4e-0732.58Show/hide
Query:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG
        L++ ++  GIW+       C + L  P++ LG F+ +++I G +G+    + LLW YL ++   ++ +L FT+ AF+VT+ GSG ++ G
Subjt:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG

Q9M1E7 Tetraspanin-35.3e-0833.66Show/hide
Query:  LAILVIIFGIWMGTHHDG--CRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLRCGYI-YFI
        L+I ++  GIW+ +  +   C + L  P++ +G  I VVS+ GF GA   N  L+W+YL+++ + +  ++ F + A+ VT+ GSG +V  L  GY+ Y++
Subjt:  LAILVIIFGIWMGTHHDG--CRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLRCGYI-YFI

Query:  Q
        +
Subjt:  Q

Q9SUD4 Tetraspanin-75.8e-0737.5Show/hide
Query:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVA
        L+I ++  GIW+G +    C + L  P++ LG F+  VSI G +GA    S LLW+YL  + + ++    FT+ AF VTN G+G  ++
Subjt:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVA

Arabidopsis top hitse value%identityAlignment
AT1G63260.1 tetraspanin101.3e-3068.09Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LA+ VIIFG+WM TH+DGCR+SLT PV+ LGGFIF++SI+GFLGA K +  LLWIYL +L I L+ ILVFTVLAFIVTNNGSGH+  GLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

AT1G63260.2 tetraspanin101.3e-3068.09Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LA+ VIIFG+WM TH+DGCR+SLT PV+ LGGFIF++SI+GFLGA K +  LLWIYL +L I L+ ILVFTVLAFIVTNNGSGH+  GLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

AT1G63260.3 tetraspanin101.3e-3068.09Show/hide
Query:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR
        +   LA+ VIIFG+WM TH+DGCR+SLT PV+ LGGFIF++SI+GFLGA K +  LLWIYL +L I L+ ILVFTVLAFIVTNNGSGH+  GLR
Subjt:  MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLR

AT2G23810.1 tetraspanin82.2e-0935.96Show/hide
Query:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG
        L+I ++  GIW+       C + L  PV+ LG F+ VV+I G +G+    + LLW+YL ++ + ++ +   TV AF+VTN G+G ++ G
Subjt:  LAILVIIFGIWMGTH-HDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAG

AT3G45600.1 tetraspanin33.7e-0933.66Show/hide
Query:  LAILVIIFGIWMGTHHDG--CRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLRCGYI-YFI
        L+I ++  GIW+ +  +   C + L  P++ +G  I VVS+ GF GA   N  L+W+YL+++ + +  ++ F + A+ VT+ GSG +V  L  GY+ Y++
Subjt:  LAILVIIFGIWMGTHHDG--CRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLRCGYI-YFI

Query:  Q
        +
Subjt:  Q


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGTTTCTGGCTATTCTTGTCATAATATTTGGGATATGGATGGGCACCCACCACGACGGTTGTCGAAAATCTCTCACTCTTCCTGTTATGGGACTTGGTGGATT
CATCTTTGTGGTGTCTATAGTTGGTTTCTTGGGTGCCCTTAAGAACAATTCAATTTTGTTGTGGATTTATCTGATCATGTTGTGCATTACGTTGGTGGGGATCCTCGTGT
TTACGGTGCTGGCGTTTATTGTTACAAATAACGGATCAGGACATTCTGTTGCTGGCTTGAGGTGTGGATATATTTACTTCATTCAACAAAAGGAGCATTCTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTACAGTTTCTGGCTATTCTTGTCATAATATTTGGGATATGGATGGGCACCCACCACGACGGTTGTCGAAAATCTCTCACTCTTCCTGTTATGGGACTTGGTGGATT
CATCTTTGTGGTGTCTATAGTTGGTTTCTTGGGTGCCCTTAAGAACAATTCAATTTTGTTGTGGATTTATCTGATCATGTTGTGCATTACGTTGGTGGGGATCCTCGTGT
TTACGGTGCTGGCGTTTATTGTTACAAATAACGGATCAGGACATTCTGTTGCTGGCTTGAGGTGTGGATATATTTACTTCATTCAACAAAAGGAGCATTCTAAGTAA
Protein sequenceShow/hide protein sequence
MLQFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHSVAGLRCGYIYFIQQKEHSK