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Lsi09G002870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G002870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box/LRR-repeat protein
Genome locationchr09:3001847..3002092
RNA-Seq ExpressionLsi09G002870
SyntenyLsi09G002870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042782.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]2.4e-2681.18Show/hide
Query:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN
        MASQN  PPSLFLFLFIILLTTTPL AARRL AS  QPENDSL PPTT+TFS AQPP AV DQ    NY VSLRKVPAGPNPLHN
Subjt:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN

KAG6579492.1 hypothetical protein SDJN03_23940, partial [Cucurbita argyrosperma subsp. sororia]2.8e-1975.58Show/hide
Query:  MASQNPIPPSLFLFLFIILLTTT-PLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKD----QNYAVSLRKVPAGPNPLHN
        MASQNPI  SL LFLFIILLTTT PLSA RRLS + Q PENDSL PPTTS FS  QPPT V++    QNYAVS RKVPAGPNPLHN
Subjt:  MASQNPIPPSLFLFLFIILLTTT-PLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKD----QNYAVSLRKVPAGPNPLHN

KAG6606114.1 Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia]1.1e-1062.03Show/hide
Query:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKD----QNYAVSLRKVPAG
        MAS NP    L LFL  ILLTT  LSA     A  QQP NDSL PPT+STFSL + P AV+D    QN+AVSLRKVPAG
Subjt:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKD----QNYAVSLRKVPAG

KGN50125.1 hypothetical protein Csa_000058 [Cucumis sativus]4.6e-2276.4Show/hide
Query:  MASQNPIPP-SLFLFLFIILL-TTTPLSAARRLSASLQQPEND--SLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN
        MASQN IPP SLFLFLF+ILL TTTPL AARR   S  QPEND  SLHPPTTSTFS  QPP AV+DQ    NY VSLRKVPAGPNPLHN
Subjt:  MASQNPIPP-SLFLFLFIILL-TTTPLSAARRLSASLQQPEND--SLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN

TrEMBL top hitse value%identityAlignment
A0A0A0KKA9 Uncharacterized protein2.2e-2276.4Show/hide
Query:  MASQNPIPP-SLFLFLFIILL-TTTPLSAARRLSASLQQPEND--SLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN
        MASQN IPP SLFLFLF+ILL TTTPL AARR   S  QPEND  SLHPPTTSTFS  QPP AV+DQ    NY VSLRKVPAGPNPLHN
Subjt:  MASQNPIPP-SLFLFLFIILL-TTTPLSAARRLSASLQQPEND--SLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN

A0A5A7THA6 F-box/LRR-repeat protein1.1e-2681.18Show/hide
Query:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN
        MASQN  PPSLFLFLFIILLTTTPL AARRL AS  QPENDSL PPTT+TFS AQPP AV DQ    NY VSLRKVPAGPNPLHN
Subjt:  MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKDQ----NYAVSLRKVPAGPNPLHN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTCAAAACCCCATTCCTCCCTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTTACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCGCCTCCCTGCAACA
ACCGGAAAATGATTCTCTCCACCCACCCACCACCTCAACATTTTCATTGGCACAGCCGCCGACCGCCGTGAAGGACCAAAACTACGCCGTTTCACTCCGCAAAGTCCCCG
CCGGTCCCAACCCACTTCATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTCAAAACCCCATTCCTCCCTCTCTCTTCCTCTTCCTCTTCATAATTCTCCTTACCACCACCCCTCTCTCCGCCGCCCGCCGCCTCTCCGCCTCCCTGCAACA
ACCGGAAAATGATTCTCTCCACCCACCCACCACCTCAACATTTTCATTGGCACAGCCGCCGACCGCCGTGAAGGACCAAAACTACGCCGTTTCACTCCGCAAAGTCCCCG
CCGGTCCCAACCCACTTCATAATTAA
Protein sequenceShow/hide protein sequence
MASQNPIPPSLFLFLFIILLTTTPLSAARRLSASLQQPENDSLHPPTTSTFSLAQPPTAVKDQNYAVSLRKVPAGPNPLHN