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Lsi09G003340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G003340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAutophagy-related protein
Genome locationchr09:3454764..3455466
RNA-Seq ExpressionLsi09G003340
SyntenyLsi09G003340
Gene Ontology termsGO:0006914 - autophagy (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0050821 - protein stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042301 - phosphate ion binding (molecular function)
InterPro domainsIPR022546 - Uncharacterised protein family Ycf68


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD3336706.1 hypothetical protein E3N88_32225 [Mikania micrantha]2.3e-5585.5Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQ W GGGNYQAGVRGANGIR P+SPS KRWILG VRIDPCS VANAL          LDMPRILLKERG+FGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHT
        LSSA ATAGDKPEEGEDDVKSSCPLCPGRHT
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHT

KAD5317821.1 hypothetical protein E3N88_17767 [Mikania micrantha]5.7e-6287.86Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQ WTGGGNYQAGVRGANGIR PS+PSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAF NADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        LSSARATAGDK EEGEDD+KSSCPLC GRHTCYNGRDKGS
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

KAD5507654.1 hypothetical protein E3N88_15357 [Mikania micrantha]4.2e-6592.65Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL-----RLDMPRILLKERGAFGNADTGGAWLSSA
        MIGRKASVGGFLSPPSNPRAQ WTGGGNYQAGVRGANGIRYPSSPSRKRWILG VRIDPCSAVANAL      LDMPRILLKE GAFGNADTGGAWLSSA
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL-----RLDMPRILLKERGAFGNADTGGAWLSSA

Query:  RATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        RATA DKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  RATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

KAF1876869.1 hypothetical protein Lal_00033161 [Lupinus albus]5.5e-6590Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLS PSNPRAQPWTGGGNYQAGV GANGIRYPSSPSRKRWILG VRIDPC+AVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

KAG9438712.1 hypothetical protein H6P81_021344 [Aristolochia fimbriata]2.0e-5977.85Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------------------------LDMPR
        MIGRKASVGGF SPPSNPRAQPWTGGGNYQAGV      RYPSSPSRKRWILGAVRIDPCSAVANAL                            LDMPR
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------------------------LDMPR

Query:  ILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        ILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  ILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

TrEMBL top hitse value%identityAlignment
A0A2N9G477 Uncharacterized protein ycf687.4e-6892.86Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

A0A2N9GIA5 Uncharacterized protein ycf681.7e-6792.81Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG

A0A2N9HP93 Uncharacterized protein ycf681.7e-6792.81Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG

A0A2N9I678 Uncharacterized protein ycf687.4e-6892.86Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

A0A2N9J9M5 Uncharacterized protein7.4e-6892.86Show/hide
Query:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW
        MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANAL          LDMPRILLKERGAFGNADTGGAW
Subjt:  MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALR---------LDMPRILLKERGAFGNADTGGAW

Query:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
        LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
Subjt:  LSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAA
TGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAA
TCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTC
AAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAA
TGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAA
TCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTC
AAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA
Protein sequenceShow/hide protein sequence
MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALRLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDV
KSSCPLCPGRHTCYNGRDKGS