; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G003940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G003940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionthylakoid lumenal protein TL20.3, chloroplastic
Genome locationchr09:4160075..4161433
RNA-Seq ExpressionLsi09G003940
SyntenyLsi09G003940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039683.1 thylakoid lumenal protein TL20.3 [Cucumis melo var. makuwa]5.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
XP_008437129.1 PREDICTED: thylakoid lumenal protein TL20.3, chloroplastic [Cucumis melo]5.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
XP_038875985.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X1 [Benincasa hispida]5.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
XP_038875987.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X2 [Benincasa hispida]5.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
XP_038875988.1 thylakoid lumenal protein TL20.3, chloroplastic isoform X3 [Benincasa hispida]5.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
TrEMBL top hitse value%identityAlignment
A0A0A0KP67 Uncharacterized protein1.9e-4498.92Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQ TGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
A0A1S3ATE2 thylakoid lumenal protein TL20.3, chloroplastic2.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
A0A5A7T9K1 Thylakoid lumenal protein TL20.32.9e-45100Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
A0A6J1DQD2 thylakoid lumenal protein TL20.3, chloroplastic isoform X21.4e-4498.92Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAII GADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
A0A6J1DTJ6 thylakoid lumenal protein TL20.3, chloroplastic isoform X11.4e-4498.92Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
        SVLTRSDLGGAII GADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK
SwissProt top hitse value%identityAlignment
B1WVN5 Pentapeptide repeat protein Rfr321.1e-0651.92Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGC
        +++ R+    A I GADFS AV+D+ +   LC  A G NP TGVSTR SLGC
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGC
Q8H1Q1 Thylakoid lumenal protein TL20.3, chloroplastic2.5e-3885.56Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE
        SVLTRSDLGGA I GADFSDAVIDL QKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+LL RDGFCD+ TGLC+
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE
Arabidopsis top hitse value%identityAlignment
AT1G12250.1 Pentapeptide repeat-containing protein1.8e-3985.56Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE
        SVLTRSDLGGA I GADFSDAVIDL QKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+LL RDGFCD+ TGLC+
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE
AT1G12250.2 Pentapeptide repeat-containing protein1.8e-3985.56Show/hide
Query:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE
        SVLTRSDLGGA I GADFSDAVIDL QKQALCKYA+GTNP+TGV TR SLGCGNSRRNAYG+PSSPLLSAPPQ+LL RDGFCD+ TGLC+
Subjt:  SVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGCTGACACGAAGCGACTTAGGCGGTGCCATAATCGTAGGCGCCGACTTTAGTGACGCCGTCATTGACCTTCCTCAAAAGCAAGCACTTTGCAAGTATGCGAG
TGGGACGAATCCAGTGACGGGAGTGAGCACGAGGGCGAGCTTAGGGTGCGGAAACAGCCGTAGAAATGCGTACGGAACGCCGTCGTCTCCTCTGCTCAGCGCACCGCCGC
AGCAGCTGCTTGACCGCGACGGTTTCTGCGACCAAGGCACTGGCCTTTGTGAGGCTACTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGCTGACACGAAGCGACTTAGGCGGTGCCATAATCGTAGGCGCCGACTTTAGTGACGCCGTCATTGACCTTCCTCAAAAGCAAGCACTTTGCAAGTATGCGAG
TGGGACGAATCCAGTGACGGGAGTGAGCACGAGGGCGAGCTTAGGGTGCGGAAACAGCCGTAGAAATGCGTACGGAACGCCGTCGTCTCCTCTGCTCAGCGCACCGCCGC
AGCAGCTGCTTGACCGCGACGGTTTCTGCGACCAAGGCACTGGCCTTTGTGAGGCTACTAAATAATAGATAAATACTTGGAGGACTTTTCTGGAAAAGTGTTGATTGGTT
TGTATATATACTCTTTAGATGGCAAATACCTCAGCTTAATTAATTACTGTTATTTTTGTTTATTTTAATTTTTTATTTCAACATGCGTGAAAGTGAGAGCGAGATAAATA
AATACTAACACTGAATTATAAA
Protein sequenceShow/hide protein sequence
MSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK