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Lsi09G004180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G004180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAutophagy-related protein
Genome locationchr09:4448435..4450334
RNA-Seq ExpressionLsi09G004180
SyntenyLsi09G004180
Gene Ontology termsGO:0006914 - autophagy (biological process)
GO:0006995 - cellular response to nitrogen starvation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR004241 - Autophagy protein Atg8 ubiquitin-like
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB10428.1 symbiosis-related like protein, partial [Arabidopsis thaliana]5.8e-1656.6Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRICLGPLLKLVVSNLPEQITSTFFLLKE-QSCLQYMKRRRMKMDFCMLLTV
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP G     +  C    G  L    SN  + I     +    +SCL   KR+RM M   M LT 
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRICLGPLLKLVVSNLPEQITSTFFLLKE-QSCLQYMKRRRMKMDFCMLLTV

Query:  ERTHLD
        E+THLD
Subjt:  ERTHLD

CAF2021664.1 unnamed protein product [Brassica napus]5.8e-1654.46Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTG-------TFFSSIINCRICLGPLLKLVVSNLPEQITSTFFLLKEQSCLQYMKRRRMKMDF
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG        FF  +   +I    +  + + N       T  +L    CL  MKR+RM M  
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTG-------TFFSSIINCRICLGPLLKLVVSNLPEQITSTFFLLKEQSCLQYMKRRRMKMDF

Query:  CMLLTVERTHLD
         M LT E+THLD
Subjt:  CMLLTVERTHLD

KAF9834139.1 hypothetical protein H0E87_030853 [Populus deltoides]5.4e-1491.49Show/hide
Query:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        WYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG   SSI
Subjt:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

RID79120.1 hypothetical protein BRARA_A01888, partial [Brassica rapa]9.2e-1484.31Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGT  SS + C +
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI

VDC75506.1 unnamed protein product [Brassica rapa]9.2e-1484.31Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGT  SS + C +
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI

TrEMBL top hitse value%identityAlignment
A0A398AU48 Autophagy-related protein (Fragment)4.5e-1484.31Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGT  SS + C +
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI

A0A3P5Z5X2 Autophagy-related protein4.5e-1484.31Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTGT  SS + C +
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSIINCRI

A0A438K3A6 Autophagy-related protein7.6e-1489.36Show/hide
Query:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        WYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG   S I
Subjt:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

A0A5C7H2M0 Autophagy-related protein5.8e-1489.36Show/hide
Query:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        WYLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG   S+I
Subjt:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

A0A6A4QTA2 Autophagy-related protein5.8e-1482.98Show/hide
Query:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        WYLVPADLTVGQFVYV+RKR+KLSPEKAIFIFV+N+LPPTG   S+I
Subjt:  WYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

SwissProt top hitse value%identityAlignment
A1CQS1 Autophagy-related protein 83.9e-1589.13Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT    SSI
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

A2QPN1 Autophagy-related protein 83.9e-1589.13Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT    SSI
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

Q0C804 Autophagy-related protein 83.9e-1589.13Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT    SSI
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

Q2UBH5 Autophagy-related protein 83.9e-1589.13Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT    SSI
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

Q4WJ27 Autophagy-related protein 83.9e-1589.13Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVD VLPPT    SSI
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

Arabidopsis top hitse value%identityAlignment
AT2G45170.1 AUTOPHAGY 8E3.6e-1686.96Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG   SS+
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

AT2G45170.2 AUTOPHAGY 8E3.6e-1686.96Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPPTG   SS+
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

AT3G60640.1 Ubiquitin-like superfamily protein6.2e-1686.96Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRI+LS EKAIFIFVDNVLPPTG   S+I
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

AT4G16520.1 Ubiquitin-like superfamily protein4.7e-1686.96Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP G   SS+
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI

AT4G16520.2 Ubiquitin-like superfamily protein4.7e-1686.96Show/hide
Query:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
        YLVPADLTVGQFVYVIRKRIKLS EKAIFIFVDNVLPP G   SS+
Subjt:  YLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGCATTCCATCAGTTACTGCTTGGTTATTTAATTCTGTTCTTATTGTTTCAAGGTT
ATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTAAGAATCACCAACATTCATCTCGTAGTTGGTACCTAGTTCCGGCAGACCTTACTGTGG
GACAATTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCGGAGAAAGCGATCTTTATCTTTGTGGACAATGTCCTCCCTCCTACAGGTACATTCTTTTCCTCTATA
ATAAATTGTAGGATATGTCTAGGACCACTTCTGAAACTTGTTGTATCCAACTTGCCTGAACAAATCACTTCAACTTTTTTCCTTCTTAAGGAGCAATCATGTCTGCAATA
TATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGATGGTAGCTGGCTTATTCTCGCTTCATTGCTACCGCCGCCGCCGT
CGTCGCCGTCGTCTTCTTCTTCTGTTCTCTCTGCCTCTTCCTTTTGCTGCTTCTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
AGAAAAGAAAAGCAGAGGCTGCAAGGATTAGGGAGAAATATCCTGATAGAATTCCGCATTCCATCAGTTACTGCTTGGTTATTTAATTCTGTTCTTATTGTTTCAAGGTT
ATTGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTAAGAATCACCAACATTCATCTCGTAGTTGGTACCTAGTTCCGGCAGACCTTACTGTGG
GACAATTTGTTTATGTCATCCGTAAAAGGATTAAATTGAGCCCGGAGAAAGCGATCTTTATCTTTGTGGACAATGTCCTCCCTCCTACAGGTACATTCTTTTCCTCTATA
ATAAATTGTAGGATATGTCTAGGACCACTTCTGAAACTTGTTGTATCCAACTTGCCTGAACAAATCACTTCAACTTTTTTCCTTCTTAAGGAGCAATCATGTCTGCAATA
TATGAAGAGAAGAAGGATGAAGATGGATTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGATGGTAGCTGGCTTATTCTCGCTTCATTGCTACCGCCGCCGCCGT
CGTCGCCGTCGTCTTCTTCTTCTGTTCTCTCTGCCTCTTCCTTTTGCTGCTTCTTGTTCTTCCAGTTCAAGGATTCTGGCAAGTGA
Protein sequenceShow/hide protein sequence
RKEKQRLQGLGRNILIEFRIPSVTAWLFNSVLIVSRLLWRRQREVTSLALIRRSKNHQHSSRSWYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGTFFSSI
INCRICLGPLLKLVVSNLPEQITSTFFLLKEQSCLQYMKRRRMKMDFCMLLTVERTHLDGSWLILASLLPPPPSSPSSSSSVLSASSFCCFLFFQFKDSGK