; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G005020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionorigin of replication complex subunit 3
Genome locationchr09:5243869..5248055
RNA-Seq ExpressionLsi09G005020
SyntenyLsi09G005020
Gene Ontology termsGO:0006270 - DNA replication initiation (biological process)
GO:0009744 - response to sucrose (biological process)
GO:0048527 - lateral root development (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0005664 - nuclear origin of replication recognition complex (cellular component)
GO:0031261 - DNA replication preinitiation complex (cellular component)
GO:0003688 - DNA replication origin binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR020795 - Origin recognition complex, subunit 3
IPR040855 - ORC3, winged helix C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143732.1 origin of replication complex subunit 3 [Cucumis sativus]6.5e-4293.55Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFK V+SHPQAKGNHRTKQCSTPKKRKDKP+VE KS+ASIQARFCTAVTELQI GLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

XP_008467329.1 PREDICTED: origin of replication complex subunit 3 [Cucumis melo]3.4e-4396.77Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHRTKQCSTPKKRKDKP+VESKSDASIQARFCTAVTELQI GLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

XP_022159468.1 origin of replication complex subunit 3 isoform X1 [Momordica charantia]3.2e-4192.47Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        Y+LAQEHGDLINLHDWFQSFKTVVSH  AK NHRTKQCSTPKKRKDKPS+E+KSDAS+QARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

XP_038906702.1 origin of replication complex subunit 3 isoform X1 [Benincasa hispida]1.7e-4296.77Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFKTV SHPQAK NHRTKQCSTPKKRKDK SVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

XP_038906703.1 origin of replication complex subunit 3 isoform X2 [Benincasa hispida]1.7e-4296.77Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFKTV SHPQAK NHRTKQCSTPKKRKDK SVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

TrEMBL top hitse value%identityAlignment
A0A0A0KRI1 SWIM-type domain-containing protein3.1e-4293.55Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFK V+SHPQAKGNHRTKQCSTPKKRKDKP+VE KS+ASIQARFCTAVTELQI GLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

A0A1S3CUK3 origin of replication complex subunit 31.7e-4396.77Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHRTKQCSTPKKRKDKP+VESKSDASIQARFCTAVTELQI GLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

A0A5A7UIL2 Origin of replication complex subunit 31.7e-4396.77Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        YSLAQEHGDLINLHDWFQSFK VVSHPQAKGNHRTKQCSTPKKRKDKP+VESKSDASIQARFCTAVTELQI GLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

A0A6J1DYU6 origin of replication complex subunit 3 isoform X21.6e-4192.47Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        Y+LAQEHGDLINLHDWFQSFKTVVSH  AK NHRTKQCSTPKKRKDKPS+E+KSDAS+QARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

A0A6J1DYW4 origin of replication complex subunit 3 isoform X11.6e-4192.47Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        Y+LAQEHGDLINLHDWFQSFKTVVSH  AK NHRTKQCSTPKKRKDKPS+E+KSDAS+QARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

SwissProt top hitse value%identityAlignment
Q0IY07 Origin of replication complex subunit 32.4e-2361.96Show/hide
Query:  SLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL
        +LAQE+GD+INLHDW+ SF  +++   +K   + K  ++P K+K KP V ++S+A IQARFC AVTELQITGLLRMPSKRRPD VQR+AFGL
Subjt:  SLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFGL

Q4R180 Origin recognition complex subunit 32.5e-0432.61Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG
        Y L  E   LINL DW ++F TVV              +  +K     +V  +    I ARF  AV+EL++ G ++ P+K++ D+V R+ +G
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG

Q6E7H0 Origin of replication complex subunit 34.4e-2562.37Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKD-KPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG
        Y LAQEH D+INLHDW+QSFKT++    +K   ++K  S  KKRK+     E+ ++A IQARFC AV ELQITGL+RMPSKRRPD+VQRVAFG
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKD-KPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG

Q9JK30 Origin recognition complex subunit 35.6e-0432.61Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG
        Y L  E   LINL DW ++F TVV              +  +K     +V  +    I ARF  AV+EL++ G ++ P+K++ D+V R+ +G
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG

Arabidopsis top hitse value%identityAlignment
AT5G16690.1 origin recognition complex subunit 33.1e-2662.37Show/hide
Query:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKD-KPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG
        Y LAQEH D+INLHDW+QSFKT++    +K   ++K  S  KKRK+     E+ ++A IQARFC AV ELQITGL+RMPSKRRPD+VQRVAFG
Subjt:  YSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKD-KPSVESKSDASIQARFCTAVTELQITGLLRMPSKRRPDYVQRVAFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGCAGGAAAAATGGAAGAATGGTTTCTGACGTGAAACCTAAGGAGGACAAAAGATTCAAAAGAGAGTCTGATACCATGAAGTTCTCATACTACTCTGTG
CAAAGGTATAGTTTAGCGCAAGAGCATGGTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTCGTTAGTCATCCTCAAGCTAAAGGGAATCAC
AGGACGAAGCAATGTTCTACACCAAAGAAAAGGAAAGATAAACCTAGCGTTGAAAGCAAAAGTGATGCATCAATTCAAGCAAGGTTTTGCACTGCTGTTACTGAA
CTGCAGATTACAGGATTGCTTCGGATGCCGAGCAAAAGACGGCCTGATTATGTACAGAGAGTGGCCTTTGGACTATAA
mRNA sequenceShow/hide mRNA sequence
CATTGTGGGTCATTCATCTGCAACCTAGGAGGAAGTAATTCTTACGAGAAGCTGAAAATTTTGAGGAAGGGCTTTTGACATGAAGCTTAAACTTGGGGAAGAAAT
TGCTTCTGATGCGAAGCAGGAAAAATGGAAGAATGGTTTCTGACGTGAAACCTAAGGAGGACAAAAGATTCAAAAGAGAGTCTGATACCATGAAGTTCTCATACT
ACTCTGTGCAAAGGTATAGTTTAGCGCAAGAGCATGGTGATCTCATCAATCTCCATGATTGGTTCCAATCGTTCAAGACAGTCGTTAGTCATCCTCAAGCTAAAG
GGAATCACAGGACGAAGCAATGTTCTACACCAAAGAAAAGGAAAGATAAACCTAGCGTTGAAAGCAAAAGTGATGCATCAATTCAAGCAAGGTTTTGCACTGCTG
TTACTGAACTGCAGATTACAGGATTGCTTCGGATGCCGAGCAAAAGACGGCCTGATTATGTACAGAGAGTGGCCTTTGGACTATAAGAACTGCAGTTGATTCAAG
CTCAATGATGCATACAAAATGAATGAGAATCCTCAGGCCACTAAAATGAGAAACGGATCGCAAGATTTCAAATCCAATATGAATCACACGTAGATGATAGTTCGA
GAGTTGGGAGCTCTCTTAAAATTCTTTCATCTTAGACGTTTGGAGAAGCAGGCCCTTGAGCACAAGAGGGAATAGAGCAAGCAATTGTTATATATAGAATGGTTG
AAATATTTACTTTGAATACTGGTTAAAACAATTCTGATTATTGAACCATGGAATAATTCTCGATATGCTGTAAGTTTATAATATAGTTCAATTGAATTGGTAGTC
TTTTATGGAAAAAGTAGGAAGTTTTCATAACATTGGGGAAAAGTAGTTGTAATATTTATTGTTGTTGGACAAAGCATTTTCTTTTATGAATATTAGTTTAGTTT
Protein sequenceShow/hide protein sequence
MRSRKNGRMVSDVKPKEDKRFKRESDTMKFSYYSVQRYSLAQEHGDLINLHDWFQSFKTVVSHPQAKGNHRTKQCSTPKKRKDKPSVESKSDASIQARFCTAVTE
LQITGLLRMPSKRRPDYVQRVAFGL