; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G005400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionrRNA processing protein EBP2
Genome locationchr09:5669271..5669681
RNA-Seq ExpressionLsi09G005400
SyntenyLsi09G005400
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5480290.1 hypothetical protein F2P56_001052, partial [Juglans regia]1.3e-0837.41Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH
        M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++++T+  +     Q  D  E  +N               D 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH

Query:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREESRRTSR
         E+ + DH+++D      D DE RR+VEEFIEKVN+GW+EE   +SR
Subjt:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREESRRTSR

KAF5480291.1 hypothetical protein F2P56_001053, partial [Juglans regia]1.5e-0939.01Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQ----KDPTERCMNFTFN--------DH
        M +S+LEL   AAS++LFIFCFFNLII ++L  SK         PN D + ++P+S++++++T   +     Q    K+ +      +++        D 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQ----KDPTERCMNFTFN--------DH

Query:  VEQSDDDHE----DEDG-DEDEFRRKVEEFIEKVNRGWREE
         E+ + DH+    D+DG D DE RR+VEEFIEKVN+GW+EE
Subjt:  VEQSDDDHE----DEDG-DEDEFRRKVEEFIEKVNRGWREE

KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2965.03Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDP-------TERCMNFTFNDHVEQSD
        MA+SILELA EAASSTLFIFC FNLI+LI+LFTS+PVS SS DH N    DD+PLSIV+HSNTN  +QN MLQK+        TE      F+D VE S 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDP-------TERCMNFTFNDHVEQSD

Query:  DDHEDEDGDEDE------FRRKVEEFIEKVNRGWREESRRTSR
        DDHEDED DEDE      F+R+VEEFIEKVN GWREE +RTSR
Subjt:  DDHEDEDGDEDE------FRRKVEEFIEKVNRGWREESRRTSR

XP_018815821.1 uncharacterized protein LOC108987375 [Juglans regia]1.3e-0837.59Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH
        M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++++T+  +     Q  D  E  +N               D 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH

Query:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREE
         E+ + DH+++D      D DE RR+VEEFIEKVN+GW+EE
Subjt:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREE

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]1.9e-3667.59Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDP-------------TERCMNFTFND
        MA+SILELA +A SSTLFIFCFFNLIIL++ FTS+P + SSFD  N  DD+DMPLSIV+HS TNTTEQNSMLQKDP             TERC+NF  N 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDP-------------TERCMNFTFND

Query:  HVEQSD----DDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRT
         VEQSD    DD+EDED DED+FR++VEEFIEKVNRGWREE  RT
Subjt:  HVEQSD----DDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRT

TrEMBL top hitse value%identityAlignment
A0A1J7H148 Uncharacterized protein1.4e-0835.03Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSFDHPNDDDD---------DDMPLSIVVHS-NTNTTEQNSML
        M +SILE    AASS+ FIFCF NLII+I+L   KP                     ++F HP D +          D  P +I V++  T   +  +++
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSFDHPNDDDD---------DDMPLSIVVHS-NTNTTEQNSML

Query:  QKDPTERCMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS
        +++  E        +  E+ +++ E+E+ D+DE +R+VEEFIEKVNRGW++ES R S
Subjt:  QKDPTERCMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS

A0A2I4E8V2 uncharacterized protein LOC1089873756.2e-0937.59Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH
        M +S+LEL   AAS++LFIFCF NLII+ ++      S      PN D +D++P+S++++++T+  +     Q  D  E  +N               D 
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQK-DPTERCMNFT-----------FNDH

Query:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREE
         E+ + DH+++D      D DE RR+VEEFIEKVN+GW+EE
Subjt:  VEQSDDDHEDED-----GDEDEFRRKVEEFIEKVNRGWREE

A0A2N9GM45 Uncharacterized protein5.6e-1043.26Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTE---------QNSMLQK-DPTERCMNFTFNDHVE
        M +S+LEL  +AAS++LFIFCF NLII ILL  SK  S S F         ++PLS+V++++TN             N ML+  D           D  E
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTE---------QNSMLQK-DPTERCMNFTFNDHVE

Query:  QSDDDH-EDEDGDEDEFRRKVEEFIEKVNRGWREESRRTSR
          ++++ +DED D+DE RR+VEEFIEKVN+GW+ E  R+SR
Subjt:  QSDDDH-EDEDGDEDEFRRKVEEFIEKVNRGWREESRRTSR

A0A5N6RPH7 Uncharacterized protein2.4e-0838.62Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTN------------------TTEQNSMLQKDPTERCMN
        M + + EL  +AAS+ LFIFCF NLII I+L  SKP   S   H       ++P+S+V+++ TN                     Q S  Q+ P +    
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTN------------------TTEQNSMLQKDPTERCMN

Query:  FTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRR
           N   +  D+D +D+D D+DE RRKVEEFIEKVN+GW+ E  R
Subjt:  FTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRR

A0A6A4NKM5 Uncharacterized protein2.4e-0836.67Show/hide
Query:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSFDHPNDDDDDDMPL---SIVVHSNTNTTEQNSMLQKDPTER
        M +SILE   EAASS+ FIFCF NLII+I+L   KP                     + F HP D +     +   S  +  N   T+ N     +  E+
Subjt:  MANSILELAVEAASSTLFIFCFFNLIILILLFTSKP------------------VSFSSFDHPNDDDDDDMPL---SIVVHSNTNTTEQNSMLQKDPTER

Query:  CMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS
               +  E+ ++D E+E+ ++DE +R+VEEFIEKVNRGW++ES  TS
Subjt:  CMNFTFNDHVEQSDDDHEDEDGDEDEFRRKVEEFIEKVNRGWREESRRTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGT
CTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGA
AAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTG
GAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTAATTCCATTCTGGAACTTGCTGTTGAGGCAGCGTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTGATCATACTCATCCTTCTCTTCACCTCAAAGCCAGT
CTCATTCTCCAGTTTTGATCATCCAAATGATGATGATGATGATGATATGCCACTTTCAATTGTCGTTCACAGCAACACAAATACAACAGAACAAAATTCCATGCTTCAGA
AAGATCCCACAGAAAGATGCATGAACTTCACCTTCAATGATCATGTTGAACAAAGTGATGATGATCATGAGGATGAGGATGGAGATGAGGATGAATTCAGACGAAAAGTG
GAAGAATTTATTGAAAAGGTTAACAGAGGGTGGAGAGAAGAAAGTCGAAGAACCTCGAGACCATCGAGAACAGTCGAATAG
Protein sequenceShow/hide protein sequence
MANSILELAVEAASSTLFIFCFFNLIILILLFTSKPVSFSSFDHPNDDDDDDMPLSIVVHSNTNTTEQNSMLQKDPTERCMNFTFNDHVEQSDDDHEDEDGDEDEFRRKV
EEFIEKVNRGWREESRRTSRPSRTVE