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Lsi09G005500 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005500
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMYB transcription factor
Genome locationchr09:5821837..5837811
RNA-Seq ExpressionLsi09G005500
SyntenyLsi09G005500
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055136.1 protein ODORANT1 [Cucumis melo var. makuwa]1.5e-3893.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

XP_004143714.1 protein ODORANT1 [Cucumis sativus]1.5e-3893.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

XP_008467265.1 PREDICTED: protein ODORANT1 [Cucumis melo]1.5e-3893.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

XP_021909396.1 protein ODORANT1-like [Carica papaya]7.5e-3892.41Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILT+GHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLL+EAE+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

XP_038875719.1 MYB-like transcription factor ODO1 [Benincasa hispida]5.2e-3994.94Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAE+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

TrEMBL top hitse value%identityAlignment
A0A067FDK1 Uncharacterized protein8.1e-3891.14Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTA+EDKKLVTFILT+GHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLL+EAE+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

A0A0A0KPP9 HTH myb-type domain-containing protein7.3e-3993.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

A0A1S3CT62 protein ODORANT17.3e-3993.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

A0A5D3DB18 Protein ODORANT17.3e-3993.67Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDE E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

A0A6J1DZG0 protein ODORANT1-like8.1e-3889.87Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDK+GVKKGPWTAEED KLVTFILTYGHCCWRA+PKLAGLRRCGKSCRLRWTNYLRPDLKRGLLD+AE+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

SwissProt top hitse value%identityAlignment
P80073 Myb-related protein Pp21.3e-2967.09Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M ++PCC+K+G+++GPWT+EED+KLV+ I   G  CWRA+PKLAGL RCGKSCRLRWTNYLRPDLKRG+  EAE+ L++
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

Q50EX6 MYB-like transcription factor ODO11.7e-3784.81Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWTAEEDKKL++FILT G CCWRAVPKLAGL+RCGKSCRLRWTNYLRPDLKRGLL +AE++LV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

Q9C7U7 Transcription factor MYB201.4e-3477.22Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDK+G+KKGPWTAEED+KL+ FILT G CCWRAVPKL+GL RCGKSCRLRWTNYLRPDLKRGLL + E+++V+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

Q9LE63 Transcription factor MYB1068.1e-2761.25Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVK
        M + PCCDK G+KKGPWT EED+KL+ +I  +GH  WR++P+ AGL+RCGKSCRLRWTNYLRPD+KRG     E+Q +++
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVK

Q9LXF1 Transcription factor MYB162.1e-2762.5Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVK
        M + PCCDKLG+KKGPWT EED+KL+ +I  +GH  WR++P+ AGL RCGKSCRLRWTNYLRPD+KRG  +  E+Q +++
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVK

Arabidopsis top hitse value%identityAlignment
AT1G66230.1 myb domain protein 209.8e-3677.22Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDK+G+KKGPWTAEED+KL+ FILT G CCWRAVPKL+GL RCGKSCRLRWTNYLRPDLKRGLL + E+++V+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

AT4G12350.1 myb domain protein 427.2e-3986.08Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKL VKKGPWTAEEDKKL+ FILT GHCCWRA+PKLAGLRRCGKSCRLRWTNYLRPDLKRGLL +AE+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

AT4G22680.1 myb domain protein 851.6e-3884.81Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV
        M +QPCCDKLGVKKGPWT EEDKKL+ FILT GHCCWRA+PKLAGLRRCGKSCRLRWTNYLRPDLKRGLL   E+QLV+
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV

AT5G16600.1 myb domain protein 433.1e-3451.41Show/hide
Query:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV-----------KDCSEITRKN
        M +QPCCDK+G+KKGPWT EEDKKL+ FILT GHCCWRA+PKL+GL RCGKSCRLRW NYLRPDLKRGLL E E+Q V+           K  S +  + 
Subjt:  MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVV-----------KDCSEITRKN

Query:  GQRNKESLEYPHQEEADKDG-DRSSYTPASTEATNRKLQPRK
            K       +++  K G D  ++ P S +  +++ Q RK
Subjt:  GQRNKESLEYPHQEEADKDG-DRSSYTPASTEATNRKLQPRK

AT5G62320.1 myb domain protein 991.0e-2956.25Show/hide
Query:  KQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHC-------CWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVKDCSEITRKNGQR-NK
        ++PCCD++G++KGPWT EED KLV F+   G+C       CWR VPKLAGLRRCGKSCRLRWTNYLRPDLKRGL  E E QLV+    ++  + G R +K
Subjt:  KQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHC-------CWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVKDCSEITRKNGQR-NK

Query:  ESLEYPHQEEAD
         ++E P + + D
Subjt:  ESLEYPHQEEAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAGCAGCCTTGTTGTGACAAACTTGGTGTCAAGAAAGGCCCTTGGACTGCTGAAGAAGACAAGAAGCTTGTCACTTTCATCCTCACTTATGGCCATTGTTGTTG
GAGGGCTGTCCCCAAGCTCGCCGGCCTCCGCCGTTGCGGCAAGAGCTGTCGTCTTCGATGGACTAACTATCTCCGACCCGACTTGAAACGTGGCCTCCTCGATGAAGCTG
AACAACAACTAGTGGTCAAAGATTGCAGCGAGATTACCAGGAAGAACGGACAACGAAATAAAGAATCACTGGAATACCCACATCAAGAAGAAGCTGATAAAGATGGGGAT
AGATCCAGTTACACACCAGCCTCTACAGAAGCAACAAACAGAAAGCTGCAGCCAAGGAAGCTGTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAGCAGCCTTGTTGTGACAAACTTGGTGTCAAGAAAGGCCCTTGGACTGCTGAAGAAGACAAGAAGCTTGTCACTTTCATCCTCACTTATGGCCATTGTTGTTG
GAGGGCTGTCCCCAAGCTCGCCGGCCTCCGCCGTTGCGGCAAGAGCTGTCGTCTTCGATGGACTAACTATCTCCGACCCGACTTGAAACGTGGCCTCCTCGATGAAGCTG
AACAACAACTAGTGGTCAAAGATTGCAGCGAGATTACCAGGAAGAACGGACAACGAAATAAAGAATCACTGGAATACCCACATCAAGAAGAAGCTGATAAAGATGGGGAT
AGATCCAGTTACACACCAGCCTCTACAGAAGCAACAAACAGAAAGCTGCAGCCAAGGAAGCTGTACTGATTCCTCAGCAGCCATAACTCCATTTTCAGAAGCTAATAGCA
CTGAAAAAGAACAGCCATTAACAAGCCAAATTTGGATGGAAGCTCTTCAAGATGATTCATGGTCGAATTTCCCAACATGGGGAAGTGAAATCTACAGTGATTTTGGATTA
TATTCTTCAGAGGATAGCTTGAATCGGTTGTTGGATTATTACAAGGAGCTTGGAGATGAGGATTTTGAGTTGGGTTCATTGGGGGATTTTAACAAACAGTTGGTGGGCAT
AGGAGAAAAGAACTGATAAAATATTTCAGCAGTTCAGTTCAGTTCAGTTCAGTTCAGTTCAAACTCATCTAATTAATCTAATTAAATGATACAGAAAGATGGGAAATCTT
ACAAGATAATTGTTGGCTTAGAAAATGTTTTGAGAATTTTCTTCTTCTCTGTTCTGAGATTTGACTGCACATATGTAAATGTAATTAGAAAAAAACCCATCAATGAAATT
AATAAATAATACAAAGGACAATGATTAAAAGATTTGAAGTTAATGGAAACCAAAAATAGAAGAGTCATTCAA
Protein sequenceShow/hide protein sequence
MTKQPCCDKLGVKKGPWTAEEDKKLVTFILTYGHCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLDEAEQQLVVKDCSEITRKNGQRNKESLEYPHQEEADKDGD
RSSYTPASTEATNRKLQPRKLY