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Lsi09G005510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005510
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationchr09:5845378..5849021
RNA-Seq ExpressionLsi09G005510
SyntenyLsi09G005510
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143713.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]8.4e-4082.41Show/hide
Query:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_008467263.1 PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]2.7e-3884.26Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_022159571.1 CDGSH iron-sulfur domain-containing protein NEET [Momordica charantia]1.5e-3673.45Show/hide
Query:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKA
        MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+EDKVVDSVL+++L+KPLT YCRCWRS TFPLCDGSHVKHNKA
Subjt:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKA

Query:  TGDNVGPLLLKKQ
        TGDNVGPLLLKKQ
Subjt:  TGDNVGPLLLKKQ

XP_022996357.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]7.4e-3675.93Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
        MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDSV++A+L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNV
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

XP_038876467.1 CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]5.6e-4487.74Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVG
        MASIVAIS PSSLSI S PPH +F G GRR  VVVRA+G GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVG
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVG

Query:  PLLLKK
        PLLLK+
Subjt:  PLLLKK

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein4.1e-4082.41Show/hide
Query:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A1S3CTC1 CDGSH iron-sulfur domain-containing protein NEET1.3e-3884.26Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A5A7UKN7 CDGSH iron-sulfur domain-containing protein NEET1.3e-3884.26Show/hide
Query:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A6J1E4B9 CDGSH iron-sulfur domain-containing protein NEET7.2e-3773.45Show/hide
Query:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKA
        MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+EDKVVDSVL+++L+KPLT YCRCWRS TFPLCDGSHVKHNKA
Subjt:  MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKA

Query:  TGDNVGPLLLKKQ
        TGDNVGPLLLKKQ
Subjt:  TGDNVGPLLLKKQ

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET3.6e-3675.93Show/hide
Query:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
        MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDSV++A+L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNV
Subjt:  MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

SwissProt top hitse value%identityAlignment
C1BI29 CDGSH iron-sulfur domain-containing protein 2A1.4e-1658.73Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B1.4e-1660.32Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A1.4e-1660.32Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q7T326 CDGSH iron-sulfur domain-containing protein 26.1e-1760.32Show/hide
Query:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + I +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET4.2e-3469.44Show/hide
Query:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
        +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDSV++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNV
Subjt:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding3.0e-3569.44Show/hide
Query:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV
        +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDSV++ ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNV
Subjt:  SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNV

Query:  GPLLLKKQ
        GPLLLKKQ
Subjt:  GPLLLKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGC
TGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGAT
GTTGGAGGTCAGGCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG
mRNA sequenceShow/hide mRNA sequence
GTTGTGTTGTGAGTTGTGAGTAAGGCAAAGGGGAGGACGTGTCAAATGGATATCCACCGATTAGGCCGTGGTTTGAATGTAACTTAAAAAGCGTATGCTCTCCACACGTT
CATCACCCATTCTTTCAATACTTAACCACACAAAAGAGATCTCAAATTATTATTGCATAATATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAA
GCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGAC
AAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTGATGGAAGCCATGTTAAGCA
CAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAGACATTCTCATGTTTTTCATTTTTGCTTTTTCCATTGCTTGAGTTTCAAATCTACTTTC
TGAATCTCTTCATCTCTTCTTTCTTTTTTCCCCTCAATAATTTCTACCTTCCAATAATCCTATCTCTCACTTTTGCTGAGGACGTTTGTGTCTGGGACTACTTTTAAAAT
TGTTAAAATCACTTTTATCAGATTTCTCACATTCATGAATTTCAAATGTACTTTCTCGTATTTAGAAGGTGTAAAACTATATGTTAAGTTAATTTAGAAGGACTAAAGGC
ATATTTGTGAATGATTGTGCGTGCGGAAAGTATGTTGGCTAAGCATAGACATAATCCAATGATCAATGTTATTAGTTGGGTGATTCCACTTTCCTTAACTAAAAA
Protein sequenceShow/hide protein sequence
MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ