CuGenDBv2

Gene ID	Lsi09G005610
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Mannan endo-1,4-beta-mannosidase
Genome location	chr09:5924335..5924784
RNA-Seq Expression	Lsi09G005610
Synteny	Lsi09G005610
Gene Ontology terms	GO:0071704 - organic substance metabolic process (biological process) GO:0005576 - extracellular region (cellular component) GO:0016985 - mannan endo-1,4-beta-mannosidase activity (molecular function)
InterPro domains	IPR035992 - Ricin B-like lectins

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055143.1 endoglucanase-like [Cucumis melo var. makuwa]

6.0e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+R I
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

KAA0055147.1 endoglucanase-like [Cucumis melo var. makuwa]

3.5e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY S+AKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

TYK00315.1 endoglucanase-like [Cucumis melo var. makuwa]

3.5e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY S+AKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

TYK11103.1 endoglucanase-like [Cucumis melo var. makuwa]

7.9e-68

86.71

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSN TTSFIMYHPLSGGC+RMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

XP_008459280.1 PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]

7.9e-68

86.71

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSN TTSFIMYHPLSGGC+RMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TI19 Mannan endo-1,4-beta-mannosidase

3.8e-68

86.71

Show/hide

Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSN TTSFIMYHPLSGGC+RMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

A0A5A7UGS0 Mannan endo-1,4-beta-mannosidase

2.9e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+R I
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

A0A5A7UKP6 Mannan endo-1,4-beta-mannosidase

1.7e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY S+AKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

A0A5D3BML8 Mannan endo-1,4-beta-mannosidase

1.7e-68

87.41

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY S+AKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

A0A5D3CGT4 Mannan endo-1,4-beta-mannosidase

3.8e-68

86.71

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Query:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL
        D SSN TTSFIMYHPLSGGC+RMNKKYQLGISSCKTSNRWSHE+D API+LAGSILCLKA+G  L PILSQDCSSQQS+WKY SNAKLQLAT+D+QGQ L
Subjt:  DLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTL

Query:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI
        CLQRASH+HQIVTNKC+C NDSQCQEDPQSQWFTLVPSN+RLI
Subjt:  CLQRASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G26130.1 Cellulase (glycosyl hydrolase family 5) protein

8.8e-17

39.85

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Query:  IMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCS-SQQSVWKYASNAKLQLATIDKQGQTLCLQRASHTH
        IM+HP +G C+     +QL + SC  S  W              ILCLKA     S  L    S S  S WK  S++K+QL++I K G ++CL   +  +
Subjt:  IMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCS-SQQSVWKYASNAKLQLATIDKQGQTLCLQRASHTH

Query:  QIVTNKCMCL-NDSQCQEDPQSQWFTLVPSNVR
         IVTN C CL  +S C  DP+SQWF LV S  R
Subjt:  QIVTNKCMCL-NDSQCQEDPQSQWFTLVPSNVR

Sequences

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CDS sequence

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ATGGTTGCTCTTAACATAGATCTGAGTTCAAATCTCACAACATCGTTCATAATGTACCATCCTCTTAGTGGTGGATGTGTGCGAATGAACAAAAAATATCAATTAGGAAT
CAGTAGTTGTAAGACTTCCAACCGTTGGAGCCATGAAGAAGACAGTGCTCCTATTAGGTTGGCAGGATCTATATTATGTTTGAAAGCTGTAGGAGATGAACTCTCTCCAA
TTCTCTCTCAAGACTGCTCGAGCCAACAAAGTGTTTGGAAATATGCCTCAAATGCCAAGCTACAACTAGCCACCATCGATAAACAAGGACAGACCTTATGCTTGCAAAGA
GCTTCTCATACCCATCAAATCGTGACTAATAAGTGCATGTGTTTGAATGATTCTCAATGTCAAGAAGATCCACAAAGCCAATGGTTTACTCTTGTTCCATCAAATGTACG
TCTCATTTAA

mRNA sequence

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Protein sequence

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MVALNIDLSSNLTTSFIMYHPLSGGCVRMNKKYQLGISSCKTSNRWSHEEDSAPIRLAGSILCLKAVGDELSPILSQDCSSQQSVWKYASNAKLQLATIDKQGQTLCLQR
ASHTHQIVTNKCMCLNDSQCQEDPQSQWFTLVPSNVRLI

Lsi09G005610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome