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Lsi09G005670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionycf20-like protein
Genome locationchr09:6107800..6108267
RNA-Seq ExpressionLsi09G005670
SyntenyLsi09G005670
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007572 - Uncharacterised protein family Ycf20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579671.1 hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia]4.2e-7292.26Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

XP_004143642.1 uncharacterized protein ycf20 [Cucumis sativus]1.4e-7595.51Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
        MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA

Query:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Subjt:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

XP_022928979.1 uncharacterized protein ycf20 [Cucurbita moschata]1.9e-7292.9Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

XP_022969949.1 uncharacterized protein ycf20 [Cucurbita maxima]1.4e-7292.9Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

XP_023549885.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo]3.2e-7292.26Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

TrEMBL top hitse value%identityAlignment
A0A0A0KPS1 Uncharacterized protein6.7e-7695.51Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
        MA SASLVHTSLL YGFTPKMNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA

Query:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Subjt:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

A0A1S3CT33 uncharacterized protein ycf20 isoform X12.0e-7292.31Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
        MA S SLVHT LL YGF+ KMN SYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGA

Query:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Subjt:  LGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

A0A5D3BMH1 Ycf20-like protein isoform X18.3e-6696.32Show/hide
Query:  MNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
        MNPSYWRYD +KSRPS PRS R+KAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Subjt:  MNPSYWRYDTIKSRPS-PRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT

Query:  RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Subjt:  RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

A0A6J1ESY7 uncharacterized protein ycf209.1e-7392.9Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

A0A6J1I440 uncharacterized protein ycf207.0e-7392.9Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
        MA SASLV T LL Y FTP+ N SYWRYD IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGAL

Query:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  GVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

SwissProt top hitse value%identityAlignment
P51214 Uncharacterized protein ycf205.8e-0847.44Show/hide
Query:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN K+G TYGLF+DAFKL S
Subjt:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNNFKMGFTYGLFIDAFKLAS

P72983 Ycf20-like protein2.6e-0835.24Show/hide
Query:  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDA
        RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +L  E V R++Y R          +LN FKMG +Y LF++A
Subjt:  RLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDA

Query:  FKLAS
        FKL S
Subjt:  FKLAS

Q1XDS2 Uncharacterized protein ycf205.2e-0942.27Show/hide
Query:  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS
        L+  L+   + S S     G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   I L NNFK+G TYGLF+DAFKL S
Subjt:  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPIALLNNFKMGFTYGLFIDAFKLAS

Q9MUL5 Uncharacterized protein ycf203.0e-0437.8Show/hide
Query:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL-----NNFKMGFTYGLFIDAFKLAS
        LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F I+ L     N  K+G  +GLF+DAFKL S
Subjt:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL-----NNFKMGFTYGLFIDAFKLAS

Arabidopsis top hitse value%identityAlignment
AT1G65420.1 Protein of unknown function (DUF565)1.8e-0435Show/hide
Query:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALLNNFKMGFTYGLFIDAFKLAS
        LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +N +K G   GLF+DAFKL S
Subjt:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALLNNFKMGFTYGLFIDAFKLAS

AT5G43050.1 Protein of unknown function (DUF565)1.8e-5270.81Show/hide
Query:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLR----IKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTIS
        MAHS S + T+L           S   + T  S P  R  R    I+A+Q+T G  PRRL+DIIR VPE+SRNYF+ PSRR LFGGISLLGGFYVAQTIS
Subjt:  MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLR----IKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTIS

Query:  LSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
        LSFGALGVNDVIAAV+CVLLTEYVTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Subjt:  LSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCC
TCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGA
GGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTA
TGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTT
CATTGATGCTTTCAAACTTGCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACATTCTGCAAGTTTAGTCCATACTAGCCTCCTATATTATGGCTTTACTCCCAAAATGAATCCTTCATATTGGAGATATGATACGATTAAATCACGACCATCCCC
TCGTAGTCTTCGTATCAAAGCTGTACAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCGA
GGAGGGCCCTTTTCGGAGGAATCTCATTGTTGGGTGGCTTTTATGTGGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTA
TGTGTTCTTCTCACCGAGTATGTTACTCGATTTTATTACAGTCGACCGAAGGTAACTTTTCCCATTGCTCTACTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTT
CATTGATGCTTTCAAACTTGCTAGTTAA
Protein sequenceShow/hide protein sequence
MAHSASLVHTSLLYYGFTPKMNPSYWRYDTIKSRPSPRSLRIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVV
CVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS