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Lsi09G005780 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G005780
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA polymerase delta subunit 4
Genome locationchr09:6216077..6217534
RNA-Seq ExpressionLsi09G005780
SyntenyLsi09G005780
Gene Ontology termsGO:0000731 - DNA synthesis involved in DNA repair (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0043625 - delta DNA polymerase complex (cellular component)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR007218 - DNA polymerase delta, subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605696.1 DNA polymerase delta subunit 4, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4368.92Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SDAVQPAAL SHGSLDL                       DYG SEN+LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRM RWE A  LGLNPPK+IE+LLK GKVQLECLW SR+
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]6.6e-5178.38Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL SHGSLDL                       DYG SEN LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
         AYGPCLGMTRMARWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]1.3e-5179.05Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL                       DYG SENMLRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRMARWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]3.0e-4368.92Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SD VQPAAL SHGSLDL                       DYG SEN+LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRM RWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]1.7e-5481.08Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MASARGGLKDFYKQRK+SGISKANSKASKPSSRK KSPANSASLGSDAVQPAAL SHGSLDL                       DYGA ENMLRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA KVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

TrEMBL top hitse value%identityAlignment
A0A0A0KND6 Uncharacterized protein3.2e-5178.38Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGSDAVQPAAL SHGSLDL                       DYG SEN LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
         AYGPCLGMTRMARWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A1S3CT23 DNA polymerase delta subunit 46.5e-5279.05Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL                       DYG SENMLRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRMARWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A5A7UNL0 DNA polymerase delta subunit 46.5e-5279.05Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MAS RGGLKDFYKQRKSSGISKA  KASKPSSRKTKSPANSASLGS+AVQPAAL SHGSLDL                       DYG SENMLRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRMARWERAC+LGLNPPKDI TLLKAGKVQLECLWDSRV
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1H180 uncharacterized protein LOC1114591431.4e-4368.92Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MASARGG+KDFYKQRK+SG+    SK SKPSSRKTKS ANSA+L SD VQPAAL SHGSLDL                       DYG SEN+LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRM RWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

A0A6J1K4T3 uncharacterized protein LOC1114911823.6e-4267.57Show/hide
Query:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN
        MASARGG+KDFYKQRK+SG+    SK SKPSS KTKS A+SA+L SD VQPAAL SHGSLDL                       DYG SEN+LRQFDMN
Subjt:  MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMN

Query:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        MAYGPCLGMTRM RWE A  LGLNPPK+IETLLK GKVQLECLW SR+
Subjt:  MAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV

SwissProt top hitse value%identityAlignment
O59835 DNA polymerase delta subunit 43.0e-0653.49Show/hide
Query:  ENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLL
        E +L  FD    YGP LGMTRM RW+RA N  LNPP+ +  +L
Subjt:  ENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLL

Q3T0X9 DNA polymerase delta subunit 49.4e-0845.45Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +L++  G  + +C LW
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Q9CWP8 DNA polymerase delta subunit 42.1e-0753.49Show/hide
Query:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA
        +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LKA
Subjt:  MLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA

Q9HCU8 DNA polymerase delta subunit 49.4e-0845.76Show/hide
Query:  ASENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW
        A   +LRQFD+   YGPC G+TR+ RW RA  +GL PP ++  +LK   G  + +C LW
Subjt:  ASENMLRQFDMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKA--GKVQLEC-LW

Arabidopsis top hitse value%identityAlignment
AT1G09815.1 polymerase delta 46.7e-3353.64Show/hide
Query:  MASARGGLKDFYKQRKSS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQF
        MA+    LK FYKQ KS+   GISK     SKPSSRK  +P ++A+ GSD  QPAAL SHGS+DL                       DY   E MLRQF
Subjt:  MASARGGLKDFYKQRKSS---GISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQF

Query:  DMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV
        DMN+ YGPCLGMTR+ RWERA  LG+NPP +IE LLK GKVQ +CLW  RV
Subjt:  DMNMAYGPCLGMTRMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGCGCGTGGAGGATTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGTATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACTAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCTTTTCTCACGGATCCCTCGACCTTCTAGGTTCATATCACTTCTTTTCCAGTCTTCTTC
GTTTCTTTACATTCCTGGATATTTGCTTTATTCATGATTATGGCGCATCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCTTATGGACCTTGTCTTGGAATGACC
AGAATGGCACGGTGGGAGCGTGCCTGTAATCTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAAAGTGCAGTTGGAGTGCTTGTGGGATTCTCG
AGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAGCGCGTGGAGGATTGAAAGATTTCTACAAGCAAAGGAAAAGCAGTGGTATCTCCAAGGCCAACAGCAAAGCTTCAAAGCCCTCTTCTAGGAAAACTAAATC
TCCGGCCAACTCTGCATCTTTGGGCTCCGATGCCGTCCAACCGGCTGCTCTCTTTTCTCACGGATCCCTCGACCTTCTAGGTTCATATCACTTCTTTTCCAGTCTTCTTC
GTTTCTTTACATTCCTGGATATTTGCTTTATTCATGATTATGGCGCATCTGAGAATATGCTGAGGCAATTTGATATGAACATGGCTTATGGACCTTGTCTTGGAATGACC
AGAATGGCACGGTGGGAGCGTGCCTGTAATCTTGGTCTGAACCCTCCAAAAGACATTGAGACACTCTTAAAAGCTGGAAAAGTGCAGTTGGAGTGCTTGTGGGATTCTCG
AGTTTAG
Protein sequenceShow/hide protein sequence
MASARGGLKDFYKQRKSSGISKANSKASKPSSRKTKSPANSASLGSDAVQPAALFSHGSLDLLGSYHFFSSLLRFFTFLDICFIHDYGASENMLRQFDMNMAYGPCLGMT
RMARWERACNLGLNPPKDIETLLKAGKVQLECLWDSRV