CuGenDBv2

Gene ID	Lsi09G005810
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Chromosome transmission fidelity protein 8 homolog
Genome location	chr09:6257462..6261219
RNA-Seq Expression	Lsi09G005810
Synteny	Lsi09G005810
Gene Ontology terms	GO:0007064 - mitotic sister chromatid cohesion (biological process) GO:0031390 - Ctf18 RFC-like complex (cellular component)
InterPro domains	IPR018607 - Chromosome transmission fidelity protein 8

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055164.1 hypothetical protein E6C27_scaffold231G00960 [Cucumis melo var. makuwa]

1.6e-53

90.68

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNL+IGILCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

KAG6579684.1 hypothetical protein SDJN03_24132, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-53

88.98

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ L+IG+LCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKK+CVDEDQ+ DTKSA AELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

XP_004143632.1 putative uncharacterized protein DDB_G0287975 isoform X1 [Cucumis sativus]

1.1e-54

92.37

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK R VDEDQ++DTKS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

XP_023551664.1 putative uncharacterized protein DDB_G0287975 [Cucurbita pepo subsp. pepo]

1.3e-53

88.98

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ L+IG+LCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKK+CVDEDQ+ DTKSA AELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

XP_038906846.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida]

6.0e-56

94.92

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKK R VDEDQ++D KSANAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPT4 Uncharacterized protein

5.5e-55

92.37

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK R VDEDQ++DTKS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

A0A1S3CT18 Uncharacterized protein

3.9e-53

90.68

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNL+IGILCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

A0A5A7UJ36 Uncharacterized protein

7.9e-54

90.68

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNL+IGILCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

A0A5D3BQB7 Uncharacterized protein

3.9e-53

90.68

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNL+IGILCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

A0A6J1EMV0 Uncharacterized protein

2.3e-53

88.14

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ L+IG+LCRPSAQEVYTFTVGYHEL GSKVPLKKPLLVLKKK+CVDEDQ+ DTKSA AELEVI
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVI

Query:  GIIRQRILFKTRPKALIS
        GIIRQRILFKTRPKALIS
Subjt:  GIIRQRILFKTRPKALIS

SwissProt top hits

e value

%identity

Alignment

P0C6T1 Chromosome transmission fidelity protein 8 homolog

4.1e-07

31.78

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Query:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  VL K     +D +   +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA

Query:  LISTIGK
        +I+ + K
Subjt:  LISTIGK

P0CG11 Chromosome transmission fidelity protein 8 homolog

2.0e-06

31.78

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Query:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E + +    L    +G L   + + +    VG+H L G  + L+KP  VL K    ++D +     +     V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA

Query:  LISTIGK
        +I+ + K
Subjt:  LISTIGK

P0CG13 Chromosome transmission fidelity protein 8 homolog

8.3e-08

32.71

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Query:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  VL K    D+D +   +       V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA

Query:  LISTIGK
        +I+++ K
Subjt:  LISTIGK

P0CG15 Chromosome transmission fidelity protein 8 homolog

1.1e-07

31.78

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Query:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  VL K     +D +   +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKA

Query:  LISTIGK
        +I+ + K
Subjt:  LISTIGK

Q54JL4 Putative uncharacterized protein DDB_G0287975

9.5e-12

34.18

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILC-RPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKK-------------KRCVDEDQ
        MQI +K     T   EW +++LQG +E    +   L+N  +GIL  +P+ ++ ++F +G   L G +VPLKKPLLV+KK             K  VD   
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILC-RPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKK-------------KRCVDEDQ

Query:  NNDT-KSANAELEVIGIIRQRILFKTRPKALI--STIGKGKIPSFRNCSVRPNNMSSV
        N D  K    E  + GI   +I F TRP   I  S++  G  P+ ++ S  P  +S V
Subjt:  NNDT-KSANAELEVIGIIRQRILFKTRPKALI--STIGKGKIPSFRNCSVRPNNMSSV

Arabidopsis top hits

e value

%identity

Alignment

AT5G52220.1 CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

2.8e-35

63.03

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Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEV
        M+I++KC CGE +C EWA+VELQGVVE Q++FQ  +QNL+IG LC   S+Q  YTFTVGYHEL GSKV LKKPLLVLKK       Q ++      ELEV
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEV

Query:  IGIIRQRILFKTRPKALIS
        +GIIR +ILFKTRPK LIS
Subjt:  IGIIRQRILFKTRPKALIS

AT5G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).

2.8e-35

63.03

Show/hide

Query:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEV
        M+I++KC CGE +C EWA+VELQGVVE Q++FQ  +QNL+IG LC   S+Q  YTFTVGYHEL GSKV LKKPLLVLKK       Q ++      ELEV
Subjt:  MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEV

Query:  IGIIRQRILFKTRPKALIS
        +GIIR +ILFKTRPK LIS
Subjt:  IGIIRQRILFKTRPKALIS

Sequences

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CDS sequence

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ATGCAGATTAAGTTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTGCAAGGCGTAGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCA
AAACCTCCAAATCGGCATTCTATGTCGCCCCTCCGCTCAGGAAGTGTATACTTTTACGGTAGGATACCATGAGCTGACAGGAAGCAAAGTGCCTCTGAAGAAGCCATTGT
TGGTGTTGAAGAAAAAGAGGTGCGTGGATGAGGATCAGAATAACGATACCAAATCGGCTAATGCGGAGTTGGAAGTTATTGGTATAATCAGGCAGCGGATTCTGTTTAAG
ACTAGACCAAAGGCTCTCATATCTACCATTGGTAAAGGAAAGATCCCGAGCTTCAGGAACTGTAGTGTCAGGCCAAACAACATGAGCTCTGTGTATAAAGGTGAAATCCA
TCCATATTTTTGCTGGGAAAAAGAAGAGAGGAAAAAGAAGATCTTGTCAATCTTAATCCCAAGACACTGTAATAAATCATCACAAACTGAGTTATTTTTGGCACCTACTT
TTCAAAGACTACCCATACACCACTATGCCTATAACAAGGGAACTTTATCCATTGCTCAAGCGGGAGGCCCGTTGCCAAAGGAAAGAAACCCTAGGAAACTAGAGGACGAA
AGCTCTTGA

mRNA sequence

Show/hide mRNA sequence

TGGGAAGTGAGAACCATGTAATTGTACATCTTCTTTCCCAAAGAGCGGGAAGAGCTCTCTAATTTCCCGCCATTTTGAATCTTCTTCAGTCATCACATCAGAGCTTCGTG
TTTTTTGTTTTCTCTCTCAAAGCAGAGGAATCAGAAATCGGTAGCCATAGAAAGATGCAGATTAAGTTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGT
CGTTGAGTTGCAAGGCGTAGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCCAAATCGGCATTCTATGTCGCCCCTCCGCTCAGGAAGTGTATACTTTTA
CGGTAGGATACCATGAGCTGACAGGAAGCAAAGTGCCTCTGAAGAAGCCATTGTTGGTGTTGAAGAAAAAGAGGTGCGTGGATGAGGATCAGAATAACGATACCAAATCG
GCTAATGCGGAGTTGGAAGTTATTGGTATAATCAGGCAGCGGATTCTGTTTAAGACTAGACCAAAGGCTCTCATATCTACCATTGGTAAAGGAAAGATCCCGAGCTTCAG
GAACTGTAGTGTCAGGCCAAACAACATGAGCTCTGTGTATAAAGGTGAAATCCATCCATATTTTTGCTGGGAAAAAGAAGAGAGGAAAAAGAAGATCTTGTCAATCTTAA
TCCCAAGACACTGTAATAAATCATCACAAACTGAGTTATTTTTGGCACCTACTTTTCAAAGACTACCCATACACCACTATGCCTATAACAAGGGAACTTTATCCATTGCT
CAAGCGGGAGGCCCGTTGCCAAAGGAAAGAAACCCTAGGAAACTAGAGGACGAAAGCTCTTGATTCAATAGTATAATATAGGAGTTATTGAGCTGAATCTTTTGATAGAA
AGTGCAATGAACATCGTTTCAGAAAAACTTTAACTTTTGCTCGAACCATTGGAGATACATGATAATTATCCTTACTTATATACTATGAATCTTTCTCTTATCTAGCTAAC
GTGAGACTTTTGTGTAAACCAAGTATTCTGTTTTTTGCATTTATTATATTAAGTGAAGAATGAATTTCACATCTTCTCCAT

Protein sequence

Show/hide protein sequence

MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFK
TRPKALISTIGKGKIPSFRNCSVRPNNMSSVYKGEIHPYFCWEKEERKKKILSILIPRHCNKSSQTELFLAPTFQRLPIHHYAYNKGTLSIAQAGGPLPKERNPRKLEDE
SS

Lsi09G005810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome