; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G006200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G006200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationchr09:6825811..6826266
RNA-Seq ExpressionLsi09G006200
SyntenyLsi09G006200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6785.43Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRR ALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G  GW+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-6886.09Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G  GW+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_011655483.1 uncharacterized protein LOC105435544 [Cucumis sativus]8.0e-6887.58Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRRR+LPE K RDD K  SRSNTLKDLFVSSPPY GT+ D+H+TAV AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP

Query:  TRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        TRNVTPVC KEKE+G VGS GWNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  TRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]4.0e-6785.43Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD +  +I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G  GW+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

XP_038875200.1 uncharacterized protein LOC120067717 [Benincasa hispida]2.2e-7392.05Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSP RRALPEKKRDDHK+ SRSNTLKDLFVSSPPY  T+GDIH+TAVAAPT
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        R+ T VCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein3.9e-6887.58Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRRR+LPE K RDD K  SRSNTLKDLFVSSPPY GT+ D+H+TAV AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAP

Query:  TRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        TRNVTPVC KEKE+G VGS GWNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  TRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A1S3CSY3 uncharacterized protein LOC1035045992.1e-6687.1Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRR RALPE KKRDDHK  SRSNTLKDLFVSSPPY GT+ D+H+TAV 
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        APT+N TPVC KEKE+G VGS GWNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  APTRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A5D3BMD8 Uncharacterized protein2.1e-6687.1Show/hide
Query:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MASLLKFKLLPTH CGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+SGRRSPRR RALPE KKRDDHK  SRSNTLKDLFVSSPPY GT+ D+H+TAV 
Subjt:  MASLLKFKLLPTH-CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRR-RALPE-KKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        APT+N TPVC KEKE+G VGS GWNPGSPRPGWTGFRYKYLLRKTWRPVL GIPE
Subjt:  APTRNVTPVC-KEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633731.2e-6684.11Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S RRSPRRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G   W+PGSPRPGWTGFR+KYLLRKTWRP+LA IPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704936.8e-6583.44Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLL+R+S     RRRALP+KKRDDHKD SRSNTLKDLFVSSPPYD ++G+I++T  AAP 
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPT

Query:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        RNVTPVC+E EDGE+G  GW+PGSPRPGWTGFRYKYLLRKTWRP+LAGIPE
Subjt:  RNVTPVCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown1.3e-1543.83Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGR-RSPR-RRALPEKKRDDHKDFSRSN-TLKDLFVSSPPYD---GTNGDIHKTA
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LL+RSS R R P  +  + E K+ D +   RS+  L DLFVSSPP++   G  G    T 
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGR-RSPR-RRALPEKKRDDHKDFSRSN-TLKDLFVSSPPYD---GTNGDIHKTA

Query:  VAAPTRNVTPVCKEKEDGEVGS------AGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        +        PV     +   G        G+N GS RP  +      LLR++WRPVL  IPE
Subjt:  VAAPTRNVTPVCKEKEDGEVGS------AGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE

AT1G68430.1 unknown protein1.1e-1442.33Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLLS +    SP RR         HKD +    LKDLFVSS            +A  
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVA

Query:  APTRNVTPVCKEKEDGEVGSAGWNPGSPR---------PGWTGFRYKYLLRKTWRPVLAGIPE
            +  P  K KE+     A     + R         P W GF  K LL++ WRP L  I E
Subjt:  APTRNVTPVCKEKEDGEVGSAGWNPGSPR---------PGWTGFRYKYLLRKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related1.4e-0938.15Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSS-GRRSPRRRALPE----------KKRDDHKDFSRSNTLKDLFVS--SPP
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  +SS  RR   R+ L E          KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSS-GRRSPRRRALPE----------KKRDDHKDFSRSNTLKDLFVS--SPP

Query:  YDG---TNGDIHKTAVAAPTRNVTP--VCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE
        Y G    +G   + +  +P  NVT     +E      GS+G            FR + +LRK WRPVL  IPE
Subjt:  YDG---TNGDIHKTAVAAPTRNVTP--VCKEKEDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACCTTAAGCCCTAGAACCAGTCCTCTTGTTCACCTCCGCCGCCGGAAAAC
CACTCTACGGATGCTTCTCAGTCGGAGTTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGAAGCAACACGT
TGAAGGATTTGTTCGTTTCGTCGCCACCGTATGATGGAACTAACGGCGATATTCACAAGACAGCGGTCGCGGCTCCGACCCGGAACGTGACTCCGGTTTGTAAGGAGAAG
GAGGATGGTGAGGTTGGATCAGCCGGTTGGAATCCCGGTTCACCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTTCGGAAAACTTGGCGGCCGGTACTCGC
CGGAATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACGCACTGCGGCGTCGCTCAGAGTCCCACCTTAAGCCCTAGAACCAGTCCTCTTGTTCACCTCCGCCGCCGGAAAAC
CACTCTACGGATGCTTCTCAGTCGGAGTTCCGGCCGTCGGTCTCCTCGCCGCCGCGCCTTGCCGGAGAAGAAGAGAGACGACCATAAGGATTTTTCCCGAAGCAACACGT
TGAAGGATTTGTTCGTTTCGTCGCCACCGTATGATGGAACTAACGGCGATATTCACAAGACAGCGGTCGCGGCTCCGACCCGGAACGTGACTCCGGTTTGTAAGGAGAAG
GAGGATGGTGAGGTTGGATCAGCCGGTTGGAATCCCGGTTCACCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTTCGGAAAACTTGGCGGCCGGTACTCGC
CGGAATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLSRSSGRRSPRRRALPEKKRDDHKDFSRSNTLKDLFVSSPPYDGTNGDIHKTAVAAPTRNVTPVCKEK
EDGEVGSAGWNPGSPRPGWTGFRYKYLLRKTWRPVLAGIPE