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Lsi09G006400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G006400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhomeobox-leucine zipper protein HOX3-like
Genome locationchr09:7091257..7091523
RNA-Seq ExpressionLsi09G006400
SyntenyLsi09G006400
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR003106 - Leucine zipper, homeobox-associated


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008467159.1 PREDICTED: homeobox-leucine zipper protein HOX3-like [Cucumis melo]3.8e-2264.29Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC
        +ECEY+KR FGSL+EQNRRL+ ELEELRAIKVAP A+VSRH+R QPPLS ST T+CPRCE IT N           A    S+V +S LKL+QPSRAC
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC

XP_022939643.1 homeobox-leucine zipper protein HOX3-like [Cucurbita moschata]8.6e-2262Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI------------TKNAIA-APRPSKVAMSTLKLQQPSRA
        MEC+YL+RWFGSL+EQNRRLRRELEELRA KVA  A+VSRH RQPPL  ST TMCP+C+ +            T+ AIA    PSK   S LKLQQPS+A
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI------------TKNAIA-APRPSKVAMSTLKLQQPSRA

XP_038875531.1 homeobox-leucine zipper protein HOX3-like isoform X1 [Benincasa hispida]3.8e-2272.22Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ
        +ECEYLKRWF SL+EQNR LRRELEELRAIKVAP AIVSR DRQPPLSTST TMCPRCE I       T+ AIAA    SKV +S LKL+
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ

XP_038875532.1 homeobox-leucine zipper protein ATHB-17-like isoform X2 [Benincasa hispida]3.8e-2272.22Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ
        +ECEYLKRWF SL+EQNR LRRELEELRAIKVAP AIVSR DRQPPLSTST TMCPRCE I       T+ AIAA    SKV +S LKL+
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ

XP_038875533.1 homeobox-leucine zipper protein ATHB-17-like isoform X3 [Benincasa hispida]3.8e-2272.22Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ
        +ECEYLKRWF SL+EQNR LRRELEELRAIKVAP AIVSR DRQPPLSTST TMCPRCE I       T+ AIAA    SKV +S LKL+
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI-------TKNAIAA-PRPSKVAMSTLKLQ

TrEMBL top hitse value%identityAlignment
A0A1S3CSV7 homeobox-leucine zipper protein HOX3-like1.9e-2264.29Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC
        +ECEY+KR FGSL+EQNRRL+ ELEELRAIKVAP A+VSRH+R QPPLS ST T+CPRCE IT N           A    S+V +S LKL+QPSRAC
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC

A0A5A7TTB8 Homeobox-leucine zipper protein HOX3-like1.9e-2264.29Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC
        +ECEY+KR FGSL+EQNRRL+ ELEELRAIKVAP A+VSRH+R QPPLS ST T+CPRCE IT N           A    S+V +S LKL+QPSRAC
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDR-QPPLSTSTTTMCPRCEHITKN---------AIAAPRPSKVAMSTLKLQQPSRAC

A0A6J1FM68 homeobox-leucine zipper protein HOX3-like4.2e-2262Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI------------TKNAIA-APRPSKVAMSTLKLQQPSRA
        MEC+YL+RWFGSL+EQNRRLRRELEELRA KVA  A+VSRH RQPPL  ST TMCP+C+ +            T+ AIA    PSK   S LKLQQPS+A
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI------------TKNAIA-APRPSKVAMSTLKLQQPSRA

A0A6J1JHC4 homeobox-leucine zipper protein ATHB-17-like isoform X21.2e-2161.96Show/hide
Query:  ECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAI--------AAPRPSKVAMSTLKLQQPS
        ECEYLKRWFGSL+EQNRRLR+ELEELRA+KVAP+A+VS H RQPPL  S  TMCPRCE ++ + I        A+  P +  +S LKL+QPS
Subjt:  ECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAI--------AAPRPSKVAMSTLKLQQPS

A0A6J1JLP7 homeobox-leucine zipper protein HOX3-like isoform X11.2e-2161.96Show/hide
Query:  ECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAI--------AAPRPSKVAMSTLKLQQPS
        ECEYLKRWFGSL+EQNRRLR+ELEELRA+KVAP+A+VS H RQPPL  S  TMCPRCE ++ + I        A+  P +  +S LKL+QPS
Subjt:  ECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAI--------AAPRPSKVAMSTLKLQQPS

SwissProt top hitse value%identityAlignment
Q0JKX1 Homeobox-leucine zipper protein HOX31.1e-1655.06Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA---IAAPRPSKVAMSTLKLQQPSR
        MECEYLKR FGSL+E+NRRL+RE+EELRA++VAP  ++S H RQ PL  S  TMCPRCE IT         P PS  A +      P R
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA---IAAPRPSKVAMSTLKLQQPSR

Q84U86 Homeobox-leucine zipper protein HOX23.3e-0842.62Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI
        ++CEYLKRW   L+++N+RL +EL +LRA+K APS   +   +    + +T TMCP C  +
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHI

Q8GXM7 Homeobox-leucine zipper protein ATHB-X1.3e-1261.29Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHIT
        MECEYLKRWFGSL EQNRRL+ E+EELRA+K              P STS  TMCPRCE +T
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHIT

Q8S9N6 Homeobox-leucine zipper protein ATHB-172.0e-1353.25Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA----IAAPRPSK
        MECEYLKRWFGSL+E+N RL RE+EELRA+KV P+ +          S S+ TMCPRCE +T  A       P P+K
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA----IAAPRPSK

Q9XH38 Homeobox-leucine zipper protein HOX31.1e-1655.06Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA---IAAPRPSKVAMSTLKLQQPSR
        MECEYLKR FGSL+E+NRRL+RE+EELRA++VAP  ++S H RQ PL  S  TMCPRCE IT         P PS  A +      P R
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA---IAAPRPSKVAMSTLKLQQPSR

Arabidopsis top hitse value%identityAlignment
AT1G70920.1 homeobox-leucine zipper protein 189.2e-1461.29Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHIT
        MECEYLKRWFGSL EQNRRL+ E+EELRA+K              P STS  TMCPRCE +T
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHIT

AT2G01430.1 homeobox-leucine zipper protein 171.4e-1453.25Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA----IAAPRPSK
        MECEYLKRWFGSL+E+N RL RE+EELRA+KV P+ +          S S+ TMCPRCE +T  A       P P+K
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNA----IAAPRPSK

AT2G44910.1 homeobox-leucine zipper protein 48.9e-0936.47Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRPSKVAMSTLKLQQPS
        ++CEYLKR   +L+E+NRRL++E+ ELRA+K++P   +      PP   +T TMCP CE ++ +A           +   + +PS
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRPSKVAMSTLKLQQPS

AT4G16780.1 homeobox protein 22.0e-0840.85Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRP
        ++CE+L+R   +L+E+NRRL++E+ ELRA+K++P   +      PP   +T TMCP CEH+   ++  P+P
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRP

AT5G06710.1 homeobox from Arabidopsis thaliana4.4e-0840Show/hide
Query:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRPSKVAMSTLKLQQPS
        ++CEYLKR   SL+E+NRRL++E++ELR +K +    +        L  +T TMCP CE +   A +A +PS  A   L L   S
Subjt:  MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRPSKVAMSTLKLQQPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTATCAGAGCAAAACCGTCGGTTGCGGCGGGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCTCCGTCGGCCAT
CGTCTCACGCCACGACCGGCAACCACCCCTCTCGACGTCTACTACAACCATGTGTCCCCGGTGTGAGCATATAACCAAGAACGCAATTGCGGCCCCAAGGCCATCGAAGG
TGGCTATGTCCACCCTCAAATTGCAGCAGCCGTCGCGAGCTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTATCAGAGCAAAACCGTCGGTTGCGGCGGGAACTGGAGGAGCTGAGGGCCATCAAGGTTGCTCCGTCGGCCAT
CGTCTCACGCCACGACCGGCAACCACCCCTCTCGACGTCTACTACAACCATGTGTCCCCGGTGTGAGCATATAACCAAGAACGCAATTGCGGCCCCAAGGCCATCGAAGG
TGGCTATGTCCACCCTCAAATTGCAGCAGCCGTCGCGAGCTTGTTGA
Protein sequenceShow/hide protein sequence
MECEYLKRWFGSLSEQNRRLRRELEELRAIKVAPSAIVSRHDRQPPLSTSTTTMCPRCEHITKNAIAAPRPSKVAMSTLKLQQPSRAC