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Lsi09G006430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G006430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionextensin-like
Genome locationchr09:7175080..7175523
RNA-Seq ExpressionLsi09G006430
SyntenyLsi09G006430
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]4.0e-4070.75Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLP N LLFL  LLLIS SS+S AV    RRL+D     TP+DPTVKC+PCEQNPPSPPPP VYPSPPPPSPPPPD++ YYSPPPP KK+ K+ +CPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        +P+FMYITGPPGDLYPIDQ+YNAA RR  +AAASAVVG  + G+L++
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4071.43Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLP N LLFL  LLLIS SS+S AV    RRL+D     TP+DPTVKC+PCEQNPPSPPPP VYPSPPPPSPPPPD++ YYSPPPP KK+ K+ +CPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        +P+FMYITGPPGDLYPIDQ+YNAA RR  +AAASAVVG  +AG+L++
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

XP_004150475.1 leucine-rich repeat extensin-like protein 6 [Cucumis sativus]7.3e-5083.67Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLPL FLLFLNFLLLIS SS  T+V  T RRL+DT   TTP+DP VKCAPCEQNPPSPPPPVVYPSPPPPSPPPPD++PYYSPPPPKKKEPKSPNCPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SPSFMYITGPPGDLYPIDQ YNAAGRRS    A+ VVG VLAGLLLV
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

XP_008467156.1 PREDICTED: extensin-like [Cucumis melo]5.0e-5185.03Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLPL FLLFLNFLLLIS SS  T  SAT RRL+DT   TTP+DP VKCAPCEQNPPSPPPP+VYPSPPPPSPPPPD++PYYSPPPPKKKEPK+PNCPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SPSFMYITGPPGDLYPIDQNYNAAGRRS AAAA   VG VLAGLLLV
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]8.6e-4373.47Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLP N LLFL  LLLIS SS+S AV    RRL+DT V  TP+DPTVKC+PCEQNPPSPPPP VYPSPPPPSPPPPD++ YYSPPPP KK+ K+ +CPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SP+FMYITGPPGDLYPIDQNYNAA RR  +AAASAV+G  +AG+L++
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein3.5e-5083.67Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLPL FLLFLNFLLLIS SS  T+V  T RRL+DT   TTP+DP VKCAPCEQNPPSPPPPVVYPSPPPPSPPPPD++PYYSPPPPKKKEPKSPNCPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SPSFMYITGPPGDLYPIDQ YNAAGRRS    A+ VVG VLAGLLLV
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

A0A1S3CT22 extensin-like2.4e-5185.03Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLPL FLLFLNFLLLIS SS  T  SAT RRL+DT   TTP+DP VKCAPCEQNPPSPPPP+VYPSPPPPSPPPPD++PYYSPPPPKKKEPK+PNCPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SPSFMYITGPPGDLYPIDQNYNAAGRRS AAAA   VG VLAGLLLV
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

A0A6J1DDL2 acrosin3.7e-3971.81Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDT-TVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPP
        MLPL  LLFLN LLLIS S+T+ A SA AR L++   VP+T  DPTVKCAPC+QNPPSPPPP +YPSPPPPSPPPPD+LPYYSPPPPKK +  + NCPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDT-TVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPP

Query:  P-SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        P  PSF YITGPPGDLYPIDQ+YNAA R  T+AAA+AVVG  L GL +V
Subjt:  P-SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

A0A6J1GMY1 extensin1.9e-4070.75Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLP N LLFL  LLLIS SS+S AV    RRL+D     TP+DPTVKC+PCEQNPPSPPPP VYPSPPPPSPPPPD++ YYSPPPP KK+ K+ +CPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        +P+FMYITGPPGDLYPIDQ+YNAA RR  + AASAVVG  +AG+L++
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

A0A6J1JNW0 leucine-rich repeat extensin-like protein 34.2e-4373.47Show/hide
Query:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP
        MLP N LLFL  LLLIS SS+S AV    RRL+DT V  TP+DPTVKC+PCEQNPPSPPPP VYPSPPPPSPPPPD++ YYSPPPP KK+ K+ +CPPPP
Subjt:  MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPP

Query:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV
        SP+FMYITGPPGDLYPIDQNYNAA RR  +AAASAV+G  +AG+L++
Subjt:  SPSFMYITGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein7.4e-0847.17Show/hide
Query:  VKCAPCEQN----PPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPPSPSFMYI-TGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFV
        V C PC QN    PPSPPPP   PSPPPPSP          PPP K   P SP  PPPP P   Y+ T PPGDLYPI+  Y AA    + +     V  V
Subjt:  VKCAPCEQN----PPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPPSPSFMYI-TGPPGDLYPIDQNYNAAGRRSTAAAASAVVGFV

Query:  LAGLLL
        +  L+L
Subjt:  LAGLLL

AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.3e-1247.41Show/hide
Query:  LISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAP-CEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPGD
        LI+ SS+S A S  AR+L++        DP +KC+P C QNPP P PP   PSPPPP+ PPP  LP   PPPPKK    S  CPPPP  +F+YITGPPG+
Subjt:  LISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAP-CEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGPPGD

Query:  LYPIDQNYN-AAGRRSTAAAASAVVGFVLAGLLLV
        LYP+D+ +  AAG+       S ++ F +   L++
Subjt:  LYPIDQNYN-AAGRRSTAAAASAVVGFVLAGLLLV

AT1G70990.1 proline-rich family protein9.3e-1145.33Show/hide
Query:  LNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQN--PPSPPPPVVYPSPPPPS---PPPPDILPYYSPPPPKKKEPKSPNCPP
        L  ++FL F ++I++S      S+T R+LE+        DP +KC PC QN  PPSPPP    PSPPPPS   PPPP  LP   P PPKK       CPP
Subjt:  LNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQN--PPSPPPPVVYPSPPPPS---PPPPDILPYYSPPPPKKKEPKSPNCPP

Query:  PPSPSFMYITGPPGDLYPIDQNYNAAGRRS-TAAAASAVVGFVLAGLLLV
        PPS +++Y+TGPPG+LYPIDQ + AA  +S T    S ++ F +   L++
Subjt:  PPSPSFMYITGPPGDLYPIDQNYNAAGRRS-TAAAASAVVGFVLAGLLLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCTCTCAATTTTCTCCTTTTTCTCAACTTCCTCCTCCTCATTTCCTCTTCCTCCACCTCCACCGCCGTCTCCGCCACCGCCCGCCGCCTCGAAGACACCACCGT
CCCAACCACCCCCTCCGACCCCACCGTCAAGTGCGCCCCATGCGAACAGAACCCTCCATCTCCCCCGCCGCCGGTTGTCTACCCCTCGCCCCCGCCGCCGTCTCCTCCGC
CGCCCGATATCCTCCCCTACTACTCTCCTCCACCCCCTAAGAAGAAGGAGCCCAAGAGCCCCAACTGCCCTCCACCGCCGTCTCCGTCGTTCATGTACATAACCGGCCCT
CCCGGTGACCTTTACCCCATCGACCAGAATTATAACGCCGCCGGACGGAGATCCACCGCCGCCGCGGCCTCCGCCGTGGTTGGGTTCGTTCTAGCCGGACTTCTGTTGGT
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCTCTCAATTTTCTCCTTTTTCTCAACTTCCTCCTCCTCATTTCCTCTTCCTCCACCTCCACCGCCGTCTCCGCCACCGCCCGCCGCCTCGAAGACACCACCGT
CCCAACCACCCCCTCCGACCCCACCGTCAAGTGCGCCCCATGCGAACAGAACCCTCCATCTCCCCCGCCGCCGGTTGTCTACCCCTCGCCCCCGCCGCCGTCTCCTCCGC
CGCCCGATATCCTCCCCTACTACTCTCCTCCACCCCCTAAGAAGAAGGAGCCCAAGAGCCCCAACTGCCCTCCACCGCCGTCTCCGTCGTTCATGTACATAACCGGCCCT
CCCGGTGACCTTTACCCCATCGACCAGAATTATAACGCCGCCGGACGGAGATCCACCGCCGCCGCGGCCTCCGCCGTGGTTGGGTTCGTTCTAGCCGGACTTCTGTTGGT
TTAA
Protein sequenceShow/hide protein sequence
MLPLNFLLFLNFLLLISSSSTSTAVSATARRLEDTTVPTTPSDPTVKCAPCEQNPPSPPPPVVYPSPPPPSPPPPDILPYYSPPPPKKKEPKSPNCPPPPSPSFMYITGP
PGDLYPIDQNYNAAGRRSTAAAASAVVGFVLAGLLLV