CuGenDBv2

Gene ID	Lsi09G006670
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
Genome location	chr09:7492505..7506554
RNA-Seq Expression	Lsi09G006670
Synteny	Lsi09G006670
Gene Ontology terms	GO:0042651 - thylakoid membrane (cellular component) GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor (molecular function)
InterPro domains	IPR019654 - NAD(P)H-quinone oxidoreductase subunit L

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046329.1 NAD(P)H-quinone oxidoreductase subunit L [Cucumis melo var. makuwa]

2.1e-69

73.82

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Query:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI
        LHIPKALPSLSSSKTLFPSLSS  KLHNLN L SNS P NFE+VGSI  EDPIGYL +KKT                   +TGDNNHEVPLTW+L QLG 
Subjt:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        VGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIKNAYLKYPFAKPEDYDW
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

KAE8648604.1 hypothetical protein Csa_008632 [Cucumis sativus]

7.5e-67

71.05

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Query:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI
        LHIPKALPSLSSSKTLFPSL S  KLHN N L SNS P NF++VGSI  EDPIGYLH+KKT                   +TG+NNHEVPLTW+L QLG+
Subjt:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD
        +GFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IKNAYLKYPFAKPEDYD
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD

KAG6601873.1 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.4e-65

69.74

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Query:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI
        MN SLGLHIPKALPSLSSSKT+ P LS+  KL  L   SN    NF+VV  I EDPIG+L QKKT                   +TGDNNHEVPLTWIL 
Subjt:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI

Query:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        QLGIVGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN YLKYPFAKPEDYDW
Subjt:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

XP_004150114.1 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Cucumis sativus]

4.0e-68

71.2

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Query:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI
        LHIPKALPSLSSSKTLFPSL S  KLHN N L SNS P NF++VGSI  EDPIGYLH+KKT                   +TG+NNHEVPLTW+L QLG+
Subjt:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        +GFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IKNAYLKYPFAKPEDYDW
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

XP_038875378.1 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic [Benincasa hispida]

2.0e-75

76.41

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Query:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI
        MN SLGLHIPKALPSLSSSKTLFPSLSS  KLHNLN  SNSK  NFEVVGSI EDP+GYLHQKKT                   +TG+NNHEVPLTWIL 
Subjt:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI

Query:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        QLGIVGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKNAYLKYPFAKPEDYDW
Subjt:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSV9 Uncharacterized protein

1.9e-68

71.2

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Query:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI
        LHIPKALPSLSSSKTLFPSL S  KLHN N L SNS P NF++VGSI  EDPIGYLH+KKT                   +TG+NNHEVPLTW+L QLG+
Subjt:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        +GFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP++PS+IKNAYLKYPFAKPEDYDW
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

A0A5D3E3M5 NAD(P)H-quinone oxidoreductase subunit L

1.0e-69

73.82

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Query:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI
        LHIPKALPSLSSSKTLFPSLSS  KLHNLN L SNS P NFE+VGSI  EDPIGYL +KKT                   +TGDNNHEVPLTW+L QLG 
Subjt:  LHIPKALPSLSSSKTLFPSLSSQIKLHNLNFL-SNSKPNNFEVVGSI-TEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        VGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP++PSQIKNAYLKYPFAKPEDYDW
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

A0A6J1DYB3 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2

5.4e-63

67.54

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Query:  LGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKK-------------------TITGDNNHEVPLTWILIQLGI
        LGLHIP+ALPSLSSS++LFPSLSS  KL  L   SNS PNN   V SI+EDPI  +HQKK                    +TGDNNHEVPL+WIL QLGI
Subjt:  LGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKK-------------------TITGDNNHEVPLTWILIQLGI

Query:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        VGFFYFL+FPPIIMNWLRIRWYRRNLLEM             IL+WAPFLNFRK PRDPS+KYPW+TPE+PSQ+KNAYLKYPFAKPEDYDW
Subjt:  VGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

A0A6J1GNR4 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1

9.9e-65

69.23

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Query:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI
        MN SLGLHIPKALPSLSSSKT+ P LS+  KL  L   SN    +F+VV  I EDPIG+L QKKT                   +TGDNNHEVPLTWIL 
Subjt:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI

Query:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        QLGIVGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN YLKYPFAKPEDYDW
Subjt:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

A0A6J1GQ77 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2

2.9e-64

68.72

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Query:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI
        MN SLGLHIPKALPSLSSSKT+ P LS+  KL  L     S P +  VV  I EDPIG+L QKKT                   +TGDNNHEVPLTWIL 
Subjt:  MNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKT-------------------ITGDNNHEVPLTWILI

Query:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW
        QLGIVGFFYFL+FPPIIMNWLRIRWYRRNLLEM             ILLWAPFLNFRKFPRDPSMKYPWSTP+EPSQIKN YLKYPFAKPEDYDW
Subjt:  QLGIVGFFYFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

SwissProt top hits

e value

%identity

Alignment

Q9CAC5 NAD(P)H-quinone oxidoreductase subunit L, chloroplastic

3.9e-34

46.24

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Query:  SLGLHIPKALPSLS----SSKTLFPSLSSQIK-----LHNLNFLSNSKPNNFEVVGSITEDPIGYL-----HQKKTITGDNNHEVPLTWILIQLGIVGFF
        SLGL+ P ALPSLS    S K+ F  ++S  K     LHN+N +     +      +I    +G +     H    ITG NN +  L+ +++ +GI+  +
Subjt:  SLGLHIPKALPSLS----SSKTLFPSLSSQIK-----LHNLNFLSNSKPNNFEVVGSITEDPIGYL-----HQKKTITGDNNHEVPLTWILIQLGIVGFF

Query:  YFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD
        YFL+ PPIIMNWLR+RWYRR   EM             +LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKYP+A PEDYD
Subjt:  YFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD

Arabidopsis top hits

e value

%identity

Alignment

AT1G70760.1 inorganic carbon transport protein-related

2.8e-35

46.24

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Query:  SLGLHIPKALPSLS----SSKTLFPSLSSQIK-----LHNLNFLSNSKPNNFEVVGSITEDPIGYL-----HQKKTITGDNNHEVPLTWILIQLGIVGFF
        SLGL+ P ALPSLS    S K+ F  ++S  K     LHN+N +     +      +I    +G +     H    ITG NN +  L+ +++ +GI+  +
Subjt:  SLGLHIPKALPSLS----SSKTLFPSLSSQIK-----LHNLNFLSNSKPNNFEVVGSITEDPIGYL-----HQKKTITGDNNHEVPLTWILIQLGIVGFF

Query:  YFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD
        YFL+ PPIIMNWLR+RWYRR   EM             +LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKYP+A PEDYD
Subjt:  YFLIFPPIIMNWLRIRWYRRNLLEM-------------ILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYD

Sequences

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CDS sequence

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ATGAAGTTTTTGAATATGAACTTCTCCCTTGGCCTTCACATCCCCAAGGCCTTGCCTTCTCTCTCCTCTTCCAAAACACTCTTTCCTTCTCTCTCTTCCCAAATTAAGCT
TCACAATTTGAATTTCCTCTCCAATTCAAAGCCTAACAATTTTGAGGTTGTGGGAAGCATCACAGAAGATCCCATTGGCTATCTTCACCAAAAGAAAACTATAACAGGTG
ACAACAACCATGAAGTTCCACTTACATGGATTTTGATACAATTAGGCATTGTTGGATTCTTTTACTTCCTTATCTTTCCTCCAATCATCATGAACTGGCTGAGGATAAGA
TGGTATAGAAGAAACTTGCTGGAAATGATTCTATTGTGGGCGCCGTTTCTGAACTTCAGAAAGTTTCCGCGAGATCCATCGATGAAGTATCCATGGTCGACGCCCGAAGA
GCCATCTCAGATAAAAAATGCATACTTGAAATACCCATTTGCTAAGCCTGAAGATTATGACTGGTAA

mRNA sequence

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Protein sequence

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MKFLNMNFSLGLHIPKALPSLSSSKTLFPSLSSQIKLHNLNFLSNSKPNNFEVVGSITEDPIGYLHQKKTITGDNNHEVPLTWILIQLGIVGFFYFLIFPPIIMNWLRIR
WYRRNLLEMILLWAPFLNFRKFPRDPSMKYPWSTPEEPSQIKNAYLKYPFAKPEDYDW

Lsi09G006670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome