CuGenDBv2

Gene ID	Lsi09G007060
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	THO complex subunit 2
Genome location	chr09:8008906..8011429
RNA-Seq Expression	Lsi09G007060
Synteny	Lsi09G007060
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006397 - mRNA processing (biological process) GO:0006406 - mRNA export from nucleus (biological process) GO:0000445 - THO complex part of transcription export complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR040007 - THO complex subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579185.1 THO complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-48

94.17

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVEC+YVVESN+REWKSGNSSFRVPQPVPV+RFLYELCWTMVRGELPF KCKAALDSVEFSD+MSAEELGSTFADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

XP_004142861.1 THO complex subunit 2 isoform X1 [Cucumis sativus]

6.0e-50

97.09

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRG+LPFQKCKAALDSVEFS+KMSAEELGSTFADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

XP_008467094.1 PREDICTED: THO complex subunit 2 [Cucumis melo]

3.0e-49

96.12

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFS+K+SAEELGS FADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

XP_031741776.1 THO complex subunit 2 isoform X2 [Cucumis sativus]

6.0e-50

97.09

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRG+LPFQKCKAALDSVEFS+KMSAEELGSTFADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

XP_038907239.1 THO complex subunit 2 [Benincasa hispida]

5.1e-49

95.15

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESN+REWKSGNSSFRVPQPVPV+RFLYELCWTMVRGELPFQKCKAALDSVEFSDK+SAEELGST ADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPA6 THO complex subunit 2

2.9e-50

97.09

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRG+LPFQKCKAALDSVEFS+KMSAEELGSTFADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

A0A1S3CSX0 THO complex subunit 2

1.4e-49

96.12

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFS+K+SAEELGS FADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

A0A5A7TYD0 THO complex subunit 2

7.2e-49

97.03

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFS+K+SAEELGS FADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  L
        L
Subjt:  L

A0A5D3CRW6 THO complex subunit 2

7.2e-49

97.03

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFS+K+SAEELGS FADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  L
        L
Subjt:  L

A0A6J1FEW8 THO complex subunit 2

7.2e-49

94.17

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        MALPPVEC+YVVESN+REWKSGNSSFRVPQPVPV+RFLYELCWTMVRGELPF KCKAALDSVEFSD+MSAEELGSTFADVITQLAQDITLAGEYRARLLK
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

SwissProt top hits

e value

%identity

Alignment

F4IAT2 THO complex subunit 2

8.5e-31

59.22

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        M+LP +EC YV E  +RE K+GN   ++P  VP++RFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T++G+ R+RL+K
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

Arabidopsis top hits

e value

%identity

Alignment

AT1G24706.1 THO2

6.0e-32

59.22

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        M+LP +EC YV E  +RE K+GN   ++P  VP++RFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T++G+ R+RL+K
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

AT1G24706.2 THO2

6.0e-32

59.22

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Query:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK
        M+LP +EC YV E  +RE K+GN   ++P  VP++RFLYEL W +VRGELP Q CKA L+ VEF DK S EEL S FADV+TQ+AQD+T++G+ R+RL+K
Subjt:  MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLK

Query:  LAR
        LA+
Subjt:  LAR

Sequences

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CDS sequence

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ATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCTCAGCCTGTCCCCGTGGTTCGCTT
CCTTTACGAGCTCTGCTGGACGATGGTCCGAGGGGAATTGCCATTTCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAG
GATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCACGTCTTTTAAAATTGGCTAGAAACGGAACCAAAATCAATTGG
AAGCCAAAAGGGATATACAAAAAATGGAGAAGAGATATCCCCAACCCCCAAGGAGGTTACAAAAAGGTCCCAGTGCTAAAAAATGTACGGAAGACTATAGTTACAAAAAG
TATAAAGAGTGCACCAAGTAGAGGGAAAAAAGTCTGA

mRNA sequence

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CCAAACCCCTATACTGTCTTTCTTCATTCACAATTCTTCATAAATCTCAAACCCTAATTTCTCTCGTATAGTAATACTAAACCCCCATGAGAACCCCATTGATTATCGTT
CTCTGCTCGTATTCTCCTTTTTGAAGCTGTTACAGCTCTCAAAACCCAGCTATTTTTTTTGGGGTCTCTTAAAGGGATTGTATAGCTTCTCCCGGCAATGGCTCTCCCTC
CGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCTCAGCCTGTCCCCGTGGTTCGCTTCCTTTACGAGCTC
TGCTGGACGATGGTCCGAGGGGAATTGCCATTTCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGC
TGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCACGTCTTTTAAAATTGGCTAGAAACGGAACCAAAATCAATTGGAAGCCAAAAGGGA
TATACAAAAAATGGAGAAGAGATATCCCCAACCCCCAAGGAGGTTACAAAAAGGTCCCAGTGCTAAAAAATGTACGGAAGACTATAGTTACAAAAAGTATAAAGAGTGCA
CCAAGTAGAGGGAAAAAAGTCTGA

Protein sequence

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MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLARNGTKINW
KPKGIYKKWRRDIPNPQGGYKKVPVLKNVRKTIVTKSIKSAPSRGKKV

Lsi09G007060 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome