; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G007920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G007920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTRAF-like family protein
Genome locationchr09:9041812..9051408
RNA-Seq ExpressionLsi09G007920
SyntenyLsi09G007920
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002083 - MATH/TRAF domain
IPR008974 - TRAF-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146379.1 ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia]7.0e-5061.45Show/hide
Query:  KLALYPNGDEKRNGS-NHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAF
        KLA+YP GD KRNGS +HISLYLV AE D       +SEVNV+FTFLVYD+LKD++L  QDG VRRFHAIK EWGFEKL+SL+TF+D+SNG LV+DCCAF
Subjt:  KLALYPNGDEKRNGS-NHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAF

Query:  GVDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRHINSPERE
        GVDV+VMK +G   W      K+ LYP G S A TG++SL+L+LDS +++ QG  VYVEYE+A+LS+ G      PE+E
Subjt:  GVDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRHINSPERE

XP_022146382.1 uncharacterized protein LOC111015610 [Momordica charantia]1.2e-4957.22Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLA+YP+GD KRNGSNHISLYLV AE D       + ++ V+FT LVYD L+D +L   DGKVRRFHA+KKEWGFEKLVSLETF+D+SNG LV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKCDGNGE--------------WRAT------LGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKH
        VD+ VMKCDG GE              W+           K+ LYP G  KA+  Y+SLFL  +S ++LPQG  VY E+EIAVLSK+
Subjt:  VDVIVMKCDGNGE--------------WRAT------LGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKH

XP_022146383.1 uncharacterized protein LOC111015611 [Momordica charantia]2.7e-4962.21Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLALYPNGD+ RNGS +ISLYLV AE   ++  + +SEVNV+ TFLVYD L+D +L   DGKVRRFHA+K EWGF KLVSLETF+D+SNG LV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSF-EKLPQGFDVYVEYEIAVLSKHGVRH
        VD+ VMK + +  W      KIRL+P G S+ + G++SL+L+ DSF E LPQG  VY E+EIAVLSK+GV H
Subjt:  VDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSF-EKLPQGFDVYVEYEIAVLSKHGVRH

XP_038874970.1 uncharacterized protein LOC120067490 [Benincasa hispida]1.7e-5157.42Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLALYPNGD KRN +NHISLYLV AE   ++ +++  E+ VM  FLVYD LKD++ T QDGKVR FHAIKKEWGFEKLVSL+TF+D SNGLLV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKC-DGNGE--------------WRA-------------------TLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSK
        VDVIVMK  DGN E              W+                        KI LYP G S A TGYMS+FL  DSFEKLPQG  VYVEY+IAVLS+
Subjt:  VDVIVMKC-DGNGE--------------WRA-------------------TLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSK

Query:  HGVRHINSP
         G  + N P
Subjt:  HGVRHINSP

XP_038875772.1 uncharacterized protein LOC120068142 [Benincasa hispida]5.0e-4854.5Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLALYPNGDE+RN SNHISLYLV+     N   +T+SEVNV+FTFLVYDTL+ ++LT QDGK+RRF A+K EWG EKL+ L+TF+DASNG LV+DCC FG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKCDGN-GE--------------WR----ATLGT---------------KIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSK
        VD+ VM CDG  GE              W+    + LG+               KI LYPSG SKA +G++S++L+ DS  +LPQG  VYVEYE+A+LS+
Subjt:  VDVIVMKCDGN-GE--------------WR----ATLGT---------------KIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSK

TrEMBL top hitse value%identityAlignment
A0A5D3BGH9 MATH domain and coiled-coil domain-containing protein4.0e-4378.95Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLA+YPNGDE+RNGSNHISLYLV AE +    N T+SEVNV FTFLVYDTLKD+++TFQDGKVRRFHA+KKEWGFEKLVSL+TF+D SNGLLV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMK-CDGNGE
        VD+IVMK  DG GE
Subjt:  VDVIVMK-CDGNGE

A0A6J1CXZ0 ubiquitin carboxyl-terminal hydrolase 12-like3.4e-5061.45Show/hide
Query:  KLALYPNGDEKRNGS-NHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAF
        KLA+YP GD KRNGS +HISLYLV AE D       +SEVNV+FTFLVYD+LKD++L  QDG VRRFHAIK EWGFEKL+SL+TF+D+SNG LV+DCCAF
Subjt:  KLALYPNGDEKRNGS-NHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAF

Query:  GVDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRHINSPERE
        GVDV+VMK +G   W      K+ LYP G S A TG++SL+L+LDS +++ QG  VYVEYE+A+LS+ G      PE+E
Subjt:  GVDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRHINSPERE

A0A6J1CYF6 uncharacterized protein LOC1110156111.3e-4962.21Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLALYPNGD+ RNGS +ISLYLV AE   ++  + +SEVNV+ TFLVYD L+D +L   DGKVRRFHA+K EWGF KLVSLETF+D+SNG LV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSF-EKLPQGFDVYVEYEIAVLSKHGVRH
        VD+ VMK + +  W      KIRL+P G S+ + G++SL+L+ DSF E LPQG  VY E+EIAVLSK+GV H
Subjt:  VDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSF-EKLPQGFDVYVEYEIAVLSKHGVRH

A0A6J1CZF3 uncharacterized protein LOC1110156063.1e-4359.15Show/hide
Query:  GDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFGVDVIVMK
        GDE+ N S         A AD +   +T+SEVNV+FTFLVYD L+D++L  QDGK+RRFHA K EWGFEKL+SL+ F + SNG LV+DCCAFGVD+IVMK
Subjt:  GDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFGVDVIVMK

Query:  CDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRH
        CDG GE RAT+G    LYP G  KATT ++SL+L LDS + LP+G  VY+E+E++VLS+ GV H
Subjt:  CDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRH

A0A6J1CZF7 uncharacterized protein LOC1110156105.8e-5057.22Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        KLA+YP+GD KRNGSNHISLYLV AE D       + ++ V+FT LVYD L+D +L   DGKVRRFHA+KKEWGFEKLVSLETF+D+SNG LV+DCCAFG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIVMKCDGNGE--------------WRAT------LGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKH
        VD+ VMKCDG GE              W+           K+ LYP G  KA+  Y+SLFL  +S ++LPQG  VY E+EIAVLSK+
Subjt:  VDVIVMKCDGNGE--------------WRAT------LGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04190.1 TRAF-like family protein1.8e-1640Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG
        +L LY NG++   GSNHISLYL   E D     T    +N +    VY+  +D++LT  DG  +R++   KEWG+ KL+ L TF D S G L  D  +FG
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVNDCCAFG

Query:  VDVIV
         ++ +
Subjt:  VDVIV

AT2G15710.1 TRAF-like family protein5.7e-1830.05Show/hide
Query:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTS-SEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNG-LLVNDCCA
        +L +YP G+EK  GS  IS+Y+   E D  + ++TS  EV     F VY+  ++++ T QD +V+RF+A++  WG  +++SLETF+D  NG     + C 
Subjt:  KLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTS-SEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNG-LLVNDCCA

Query:  FGVDVI------------------------------VMKCDGNGEWRATLGTK---IRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLS
        FGVDV+                              V+K +     R ++G +   +++YP G  +    ++S+FL L   E L     +YV   + VL 
Subjt:  FGVDVI------------------------------VMKCDGNGEWRATLGTK---IRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLS

Query:  KHG
          G
Subjt:  KHG

AT3G17380.1 TRAF-like family protein6.8e-2731.36Show/hide
Query:  FSTTNPDSAAVLRKLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDA
        + T + ++     KL LYPNG++ +N  +H+S+YL +A++ +  P     EV  +F   + D  KD +L  Q G  RRFH++K+EWGF+K +   TF DA
Subjt:  FSTTNPDSAAVLRKLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDA

Query:  SNGLLVNDCCAFGVDVIVMK-----------------------------------CDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQG
        SNG L+ D C FG DV V K                                    D N  +      KI  YP+G  + T  ++S++L L   E +  G
Subjt:  SNGLLVNDCCAFGVDVIVMK-----------------------------------CDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQG

Query:  FDVYVEYEIAVLSKHGVRHI
          ++VE+ I +  +   RHI
Subjt:  FDVYVEYEIAVLSKHGVRHI

AT3G20360.1 TRAF-like family protein3.0e-1938.03Show/hide
Query:  LALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVN-DCCAFG
        L +YP G++  NG+ HISLY+V+   D +   + S EV+V   F V++  + ++ T QD  V RF AIK+ WGF K++ L TF++  NG L + D C FG
Subjt:  LALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLVN-DCCAFG

Query:  VDVIV----MKCDGNGEWRATLGTKIRLYPSGYSKATTGYMS
        VDVI+     K +     ++    +   Y  GYS   T Y+S
Subjt:  VDVIV----MKCDGNGEWRATLGTKIRLYPSGYSKATTGYMS

AT5G26260.1 TRAF-like family protein5.4e-1637.17Show/hide
Query:  DSAAVLRKLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLV
        ++A    +L LY  G+ K   +NHISLY  + E +T        EVNV     V++    ++L+  DG V+R++  KKEWGF +L+SL TF++A+ G LV
Subjt:  DSAAVLRKLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEKLVSLETFHDASNGLLV

Query:  NDCCAFGVDVIVM
         D  +FG ++ ++
Subjt:  NDCCAFGVDVIVM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCAGATATGGAAACTAAAACGAAGAAGAATGATGATATCATCACCTCTTCCTTTTCCACAACAAACCCAGATTCTGCTGCTGTTTTAAGGAAATTAGCTCT
TTATCCCAATGGAGATGAGAAAAGAAATGGTTCTAATCATATCTCCCTCTATTTGGTAATGGCTGAGGCTGACACTAATCAACCCAACACTACTTCTTCAGAGGTTAATG
TTATGTTTACATTTCTTGTTTATGATACTCTGAAAGACCAATTCTTGACATTCCAAGATGGGAAAGTAAGACGTTTTCATGCCATTAAGAAAGAGTGGGGGTTTGAGAAG
TTAGTGTCACTTGAGACTTTTCATGACGCTTCAAATGGATTGTTGGTGAATGATTGTTGTGCATTTGGAGTTGACGTTATTGTCATGAAATGTGATGGGAATGGGGAGTG
GAGAGCCACACTTGGTACGAAAATACGACTATATCCTAGTGGATACTCCAAGGCCACGACGGGCTATATGTCCTTGTTCTTGATGCTTGATAGTTTCGAGAAGCTTCCCC
AAGGTTTTGATGTTTACGTTGAATATGAGATAGCTGTACTGAGCAAACATGGAGTTAGGCATATAAATTCTCCAGAGCGTGAAATTGAAATGATTGGGGACGCGCTCCAA
CGGTGTTTTGTGGAAAATGTCTACGCTCCTTCAGAAACTTGCTCCATTACTCCAACCCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATCAGATATGGAAACTAAAACGAAGAAGAATGATGATATCATCACCTCTTCCTTTTCCACAACAAACCCAGATTCTGCTGCTGTTTTAAGGAAATTAGCTCT
TTATCCCAATGGAGATGAGAAAAGAAATGGTTCTAATCATATCTCCCTCTATTTGGTAATGGCTGAGGCTGACACTAATCAACCCAACACTACTTCTTCAGAGGTTAATG
TTATGTTTACATTTCTTGTTTATGATACTCTGAAAGACCAATTCTTGACATTCCAAGATGGGAAAGTAAGACGTTTTCATGCCATTAAGAAAGAGTGGGGGTTTGAGAAG
TTAGTGTCACTTGAGACTTTTCATGACGCTTCAAATGGATTGTTGGTGAATGATTGTTGTGCATTTGGAGTTGACGTTATTGTCATGAAATGTGATGGGAATGGGGAGTG
GAGAGCCACACTTGGTACGAAAATACGACTATATCCTAGTGGATACTCCAAGGCCACGACGGGCTATATGTCCTTGTTCTTGATGCTTGATAGTTTCGAGAAGCTTCCCC
AAGGTTTTGATGTTTACGTTGAATATGAGATAGCTGTACTGAGCAAACATGGAGTTAGGCATATAAATTCTCCAGAGCGTGAAATTGAAATGATTGGGGACGCGCTCCAA
CGGTGTTTTGTGGAAAATGTCTACGCTCCTTCAGAAACTTGCTCCATTACTCCAACCCCATGA
Protein sequenceShow/hide protein sequence
MEKSDMETKTKKNDDIITSSFSTTNPDSAAVLRKLALYPNGDEKRNGSNHISLYLVMAEADTNQPNTTSSEVNVMFTFLVYDTLKDQFLTFQDGKVRRFHAIKKEWGFEK
LVSLETFHDASNGLLVNDCCAFGVDVIVMKCDGNGEWRATLGTKIRLYPSGYSKATTGYMSLFLMLDSFEKLPQGFDVYVEYEIAVLSKHGVRHINSPEREIEMIGDALQ
RCFVENVYAPSETCSITPTP