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Lsi09G007930 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G007930
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMATH domain and coiled-coil domain-containing protein
Genome locationchr09:9055992..9058943
RNA-Seq ExpressionLsi09G007930
SyntenyLsi09G007930
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002083 - MATH/TRAF domain
IPR008974 - TRAF-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146379.1 ubiquitin carboxyl-terminal hydrolase 12-like [Momordica charantia]5.3e-2039.41Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG----------------------------------------
        KLA+YP GD KRNGS+ HISLYLV AE   D + T  E+NV+FTFLVYD+ KD Y  +Q                                         
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG----------------------------------------

Query:  ------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKKGKCN
                     K+WLYPKG       FLSLYL LD+ KE+ +G +VYVE+E+ +LSQ   EP+K   N
Subjt:  ------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKKGKCN

XP_022146382.1 uncharacterized protein LOC111015610 [Momordica charantia]4.8e-1332.11Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTI------------------------------------------
        KLA+YP+GD KRNGSN HISLYLV+AED        L++ V+FT LVYDN +DNY  +                                          
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTI------------------------------------------

Query:  -------------------------------------QGTKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVE
                                             +  K+ LYPKG  K + ++LSL+L  +++KELP+G RVY EFE+ VLS++  E
Subjt:  -------------------------------------QGTKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVE

XP_022146383.1 uncharacterized protein LOC111015611 [Momordica charantia]3.5e-1639.53Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------
        KLALYPNGD  RNGS  +ISLYLV+AE  D+ +S   E+NV+ TFLVYDN +DNY  +   K+                                     
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------

Query:  ------------W---LYPKGDLKHTNNFLSLYLALDNVKE-LPKGFRVYVEFEMDVLSQFKVEPKK--GKC
                    W   L+PKG  + +  FLSLYL  D+ KE LP+G RVY EFE+ VLS++ V  KK   KC
Subjt:  ------------W---LYPKGDLKHTNNFLSLYLALDNVKE-LPKGFRVYVEFEMDVLSQFKVEPKK--GKC

XP_038874970.1 uncharacterized protein LOC120067490 [Benincasa hispida]4.3e-1433Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------
        KLALYPNGD KRN +N HISLYLVSAE  D+  S+GLEI VM  FLVYDN KD YWTIQ  K+                                     
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------

Query:  -----------------------------------------------------W---LYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQ
                                                             W   LYP+GD      ++S++L  D+ ++LP+G RVYVE+++ VLSQ
Subjt:  -----------------------------------------------------W---LYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQ

XP_038875772.1 uncharacterized protein LOC120068142 [Benincasa hispida]2.4e-1231.02Show/hide
Query:  EWVVSKLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG-----------------------------------
        EW   KLALYPNGD +RN SN HISLYLV    G++ LST  E+NV+FTFLVYD  +  Y T+Q                                    
Subjt:  EWVVSKLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG-----------------------------------

Query:  ----------------------------------------------------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEM
                                                                   KI LYP G  K  + FLS+YL  D+  +LP+G +VYVE+EM
Subjt:  ----------------------------------------------------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEM

Query:  DVLSQFKVEPKKGKCN
         +LSQ +  P K   N
Subjt:  DVLSQFKVEPKKGKCN

TrEMBL top hitse value%identityAlignment
A0A0A0KND8 Uncharacterized protein4.0e-1331.8Show/hide
Query:  EWVVSKLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG-----------------------------------
        EW   KLALYPNGD +R+ S+ HISLYLV    GD+ LST  E+N +FTFLVYD  +  Y T+Q                                    
Subjt:  EWVVSKLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG-----------------------------------

Query:  ----------------------------------------------------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEM
                                                                   KI L+P GDL+    F S+YL L N+KE P+G +VYVE+EM
Subjt:  ----------------------------------------------------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEM

Query:  DVLSQFK-VEPKKGKCN
         VLSQ + V P K  CN
Subjt:  DVLSQFK-VEPKKGKCN

A0A6J1CXZ0 ubiquitin carboxyl-terminal hydrolase 12-like2.6e-2039.41Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG----------------------------------------
        KLA+YP GD KRNGS+ HISLYLV AE   D + T  E+NV+FTFLVYD+ KD Y  +Q                                         
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQG----------------------------------------

Query:  ------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKKGKCN
                     K+WLYPKG       FLSLYL LD+ KE+ +G +VYVE+E+ +LSQ   EP+K   N
Subjt:  ------------TKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKKGKCN

A0A6J1CYF6 uncharacterized protein LOC1110156111.7e-1639.53Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------
        KLALYPNGD  RNGS  +ISLYLV+AE  D+ +S   E+NV+ TFLVYDN +DNY  +   K+                                     
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------

Query:  ------------W---LYPKGDLKHTNNFLSLYLALDNVKE-LPKGFRVYVEFEMDVLSQFKVEPKK--GKC
                    W   L+PKG  + +  FLSLYL  D+ KE LP+G RVY EFE+ VLS++ V  KK   KC
Subjt:  ------------W---LYPKGDLKHTNNFLSLYLALDNVKE-LPKGFRVYVEFEMDVLSQFKVEPKK--GKC

A0A6J1CZF3 uncharacterized protein LOC1110156063.3e-1235.37Show/hide
Query:  GDTKRNGSNSHISLYLVSAEDGDDK-LSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------------
        GD + N S S   ++   +   DD  LST  E+NV+FTFLVYD  +D Y  +Q  KI                                           
Subjt:  GDTKRNGSNSHISLYLVSAEDGDDK-LSTGLEINVMFTFLVYDNHKDNYWTIQGTKI-------------------------------------------

Query:  -------------WLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKK
                     WLYPKG  K T +FLSLYL LD++K+LPKG +VY+E+EM VLSQF V   K
Subjt:  -------------WLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVEPKK

A0A6J1CZF7 uncharacterized protein LOC1110156102.3e-1332.11Show/hide
Query:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTI------------------------------------------
        KLA+YP+GD KRNGSN HISLYLV+AED        L++ V+FT LVYDN +DNY  +                                          
Subjt:  KLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTI------------------------------------------

Query:  -------------------------------------QGTKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVE
                                             +  K+ LYPKG  K + ++LSL+L  +++KELP+G RVY EFE+ VLS++  E
Subjt:  -------------------------------------QGTKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQFKVE

SwissProt top hitse value%identityAlignment
Q9M2H9 MATH domain and coiled-coil domain-containing protein At3g583706.5e-0533.72Show/hide
Query:  VSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTK--IWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQ
        + +E+ D+K +  ++    F+ L YD    + + I G K  +  YPKG+    NN LSLYL +D+ + LP G+R Y +F + +++Q
Subjt:  VSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTK--IWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVEFEMDVLSQ

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCGCCTGCTGTAGAGTCGAATGGGTTGTCTCGAAATTAGCTCTATATCCCAATGGAGATACCAAAAGAAATGGGTCAAATAGTCATATCTCCCTCTATTTGGTATCAGC
TGAAGATGGAGATGACAAATTATCGACGGGTTTAGAGATCAATGTTATGTTTACTTTTCTTGTTTATGATAATCATAAAGATAATTATTGGACCATACAAGGTACGAAAA
TATGGCTATATCCTAAAGGAGATTTGAAGCATACAAACAACTTTTTGTCGTTGTACTTGGCGCTTGATAATGTTAAGGAGCTTCCTAAAGGTTTTAGGGTTTATGTTGAA
TTTGAGATGGATGTATTAAGCCAATTTAAAGTTGAACCAAAGAAAGGAAAATGTAATTAA
mRNA sequenceShow/hide mRNA sequence
CCCGCCTGCTGTAGAGTCGAATGGGTTGTCTCGAAATTAGCTCTATATCCCAATGGAGATACCAAAAGAAATGGGTCAAATAGTCATATCTCCCTCTATTTGGTATCAGC
TGAAGATGGAGATGACAAATTATCGACGGGTTTAGAGATCAATGTTATGTTTACTTTTCTTGTTTATGATAATCATAAAGATAATTATTGGACCATACAAGGTACGAAAA
TATGGCTATATCCTAAAGGAGATTTGAAGCATACAAACAACTTTTTGTCGTTGTACTTGGCGCTTGATAATGTTAAGGAGCTTCCTAAAGGTTTTAGGGTTTATGTTGAA
TTTGAGATGGATGTATTAAGCCAATTTAAAGTTGAACCAAAGAAAGGAAAATGTAATTAA
Protein sequenceShow/hide protein sequence
PACCRVEWVVSKLALYPNGDTKRNGSNSHISLYLVSAEDGDDKLSTGLEINVMFTFLVYDNHKDNYWTIQGTKIWLYPKGDLKHTNNFLSLYLALDNVKELPKGFRVYVE
FEMDVLSQFKVEPKKGKCN