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Lsi09G008000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G008000
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionV-set and immunoglobulin domain-containing protein
Genome locationchr09:9199357..9201765
RNA-Seq ExpressionLsi09G008000
SyntenyLsi09G008000
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601944.1 hypothetical protein SDJN03_07177, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5085.82Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF P P+VP RA FRPS  SPAVRFSG+ SA+R LRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        EEDEENKD  SE+SFEEKPALPRTRNRPKREAEV
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

KAG7032638.1 hypothetical protein SDJN02_06688 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-5085.82Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF P P+VP RAFFRPS  SPAVRFSG+ SA+R LRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        EEDEENKD  SE+SFE KPALPRTRNRPKREAEV
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

XP_022961614.1 uncharacterized protein LOC111462310 [Cucurbita moschata]3.0e-5085.71Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF P P+VP RAFFRPS  SPAVRFSG+ SA+R LRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAE
        EEDEENKD  SE+ FEEKPALPRTRNRPKREAE
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAE

XP_023525740.1 uncharacterized protein LOC111789252 [Cucurbita pepo subsp. pepo]2.1e-5186.57Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF P P+VP RAFFRPS  SPAVRFSG+ SA+R LRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        EEDEENKD  SE+SFEEKPALPRTRNRPKREAEV
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

XP_038875344.1 uncharacterized protein LOC120067823 [Benincasa hispida]1.4e-5284.03Show/hide
Query:  TLPLP-----MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFL
        ++P+P     MA+LLISTRPFPFS   V PPRAFFRPS FSPAV FSG  S SR LRV+TTRAG STSSYIFAFSIPLSLILIT LTALKIGDNLDKKFL
Subjt:  TLPLP-----MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFL

Query:  EELALNQAIMEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        EELALNQAIMEEDEENKDDGSE+SFEEKPALPRTRNRPKREAEV
Subjt:  EELALNQAIMEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

TrEMBL top hitse value%identityAlignment
A0A1S3CQ37 uncharacterized protein LOC1035034022.1e-4983.58Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MAR LISTRPFPFS  P+ PPRAFFRP TFSP VRFS   S SRTLRV+ TRAG STSSYIFAFSIPLSLILIT LTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        EEDE+ + DG+E+SFEEKP LPRTRNRPKREAEV
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

A0A6J1FJ66 uncharacterized protein LOC1114447531.4e-4883.7Show/hide
Query:  MARLLISTRP-FPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAI
        MARLLISTR  FP S  PV P RAFFRPS  SPAVRF G+ SA +TLR++TTRAG STSSYIFAFSIP SL+L+TALTALKIGDNLDKKFLEELALNQAI
Subjt:  MARLLISTRP-FPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAI

Query:  MEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        MEEDEENKDDGS +SFEEKPALPRTRNRPKREAEV
Subjt:  MEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

A0A6J1HEK5 uncharacterized protein LOC1114623101.5e-5085.71Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF P P+VP RAFFRPS  SPAVRFSG+ SA+R LRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAE
        EEDEENKD  SE+ FEEKPALPRTRNRPKREAE
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREAE

A0A6J1JTZ0 uncharacterized protein LOC1114874911.2e-4986.36Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM
        MARLLISTR FPF   P+VP RAFFRPS  SPAVRFSG+ SA+RTLRV+TTRAG STSSYIFAFSIP SLIL+TALTALKIGDNLDKKFLEELALNQAIM
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAIM

Query:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREA
        EEDEENKD  SE+SFEEKPALPRTRNRPKREA
Subjt:  EEDEENKDDGSEVSFEEKPALPRTRNRPKREA

A0A6J1K146 uncharacterized protein LOC1114896906.8e-4883.7Show/hide
Query:  MARLLISTRP-FPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAI
        MARLLISTR  FP S  PVVP RA FRPS  SPAVRF G++SA +TLR++TTRAG STSSYIFAFSI  SLIL+TALTALKIGDNLDKKFLEELALNQAI
Subjt:  MARLLISTRP-FPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELALNQAI

Query:  MEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV
        MEEDEENKDDGS +SFEEKPALPRTRNRPKREAEV
Subjt:  MEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G31560.1 high chlorophyll fluorescence 1531.0e-1644.6Show/hide
Query:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRF----SGETSASRTLR--VMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELA
        MARL +S    P  P  +  P +  +P    PA  F    +G    +R +R   + TRAGPSTSSY+ AF+IP +LI  T  T++KI D LD+ FLE++A
Subjt:  MARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRF----SGETSASRTLR--VMTTRAGPSTSSYIFAFSIPLSLILITALTALKIGDNLDKKFLEELA

Query:  LNQAI--MEEDEENKDDGSEVSFEEKPALPRTRNRPKRE
        LNQAI   E+ E  + D S     ++P L RTRNRPKRE
Subjt:  LNQAI--MEEDEENKDDGSEVSFEEKPALPRTRNRPKRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCAATTGCTTGGAGAGGTCCATTGGATTGGAGTTGGGCCGTCCATTGTCTTCACACCCATTTACATGATAACAACTTCCAGCCTTCAACAATGTCCATTCCAGTT
CCATACACTTCCACTACCTATGGCCAGGCTCCTTATCTCAACCCGGCCCTTTCCCTTTTCCCCTCCCCCCGTCGTTCCGCCACGGGCATTCTTCAGGCCCTCCACTTTTT
CGCCGGCGGTCAGATTCTCCGGCGAAACATCGGCGTCCAGAACCCTACGAGTGATGACGACTCGTGCCGGCCCCAGCACCAGCAGTTACATCTTTGCCTTCTCCATCCCT
TTATCTCTTATTCTCATCACTGCCCTCACCGCTCTTAAAATCGGCGATAACCTCGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAATCAAGCCATCATGGAGGAAGATGA
GGAGAACAAAGATGATGGTTCAGAAGTATCTTTTGAAGAAAAGCCAGCTCTTCCACGAACTCGCAACCGCCCTAAAAGGGAAGCTGAGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCAATTGCTTGGAGAGGTCCATTGGATTGGAGTTGGGCCGTCCATTGTCTTCACACCCATTTACATGATAACAACTTCCAGCCTTCAACAATGTCCATTCCAGTT
CCATACACTTCCACTACCTATGGCCAGGCTCCTTATCTCAACCCGGCCCTTTCCCTTTTCCCCTCCCCCCGTCGTTCCGCCACGGGCATTCTTCAGGCCCTCCACTTTTT
CGCCGGCGGTCAGATTCTCCGGCGAAACATCGGCGTCCAGAACCCTACGAGTGATGACGACTCGTGCCGGCCCCAGCACCAGCAGTTACATCTTTGCCTTCTCCATCCCT
TTATCTCTTATTCTCATCACTGCCCTCACCGCTCTTAAAATCGGCGATAACCTCGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAATCAAGCCATCATGGAGGAAGATGA
GGAGAACAAAGATGATGGTTCAGAAGTATCTTTTGAAGAAAAGCCAGCTCTTCCACGAACTCGCAACCGCCCTAAAAGGGAAGCTGAGGTATAAATAAATTGCATAAGTT
TTTTTGGAGGTGAACATATGATCGGATCAGACGGCTGAGAAATGGCTCAAGTAACTAGGAAACTTCCATGTATATTGTATGTAATTTTTTTTCCTTAATAATGATTAGTA
AAAAATTAGTTCGTATGCTAAGTTTGATATTTATAAATATTGTTACTTATTCTTCAAATTGAAATATCATTTTGGTTTATTACTATATTTTCATTAAATCTTAAATTTAG
TCCTTTCGA
Protein sequenceShow/hide protein sequence
MGQLLGEVHWIGVGPSIVFTPIYMITTSSLQQCPFQFHTLPLPMARLLISTRPFPFSPPPVVPPRAFFRPSTFSPAVRFSGETSASRTLRVMTTRAGPSTSSYIFAFSIP
LSLILITALTALKIGDNLDKKFLEELALNQAIMEEDEENKDDGSEVSFEEKPALPRTRNRPKREAEV