CuGenDBv2

Gene ID	Lsi09G008140
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	U3 small nucleolar ribonucleoprotein protein IMP4
Genome location	chr09:9323213..9331037
RNA-Seq Expression	Lsi09G008140
Synteny	Lsi09G008140
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0016363 - nuclear matrix (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0034457 - Mpp10 complex (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0030515 - snoRNA binding (molecular function) GO:0042134 - rRNA primary transcript binding (molecular function)
InterPro domains	IPR007109 - Brix domain IPR044281 - U3 snoRNP protein/Ribosome production factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579112.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-137

86.99

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

KAG7016636.1 U3 small nucleolar ribonucleoprotein IMP4, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-137

86.99

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

XP_004143747.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis sativus]

1.4e-139

89.08

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

XP_008465711.1 PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cucumis melo]

1.4e-139

89.08

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

XP_038907229.1 U3 small nucleolar ribonucleoprotein protein IMP4 [Benincasa hispida]

4.0e-139

89.04

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKRDFLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPI1 U3 small nucleolar ribonucleoprotein protein IMP4

6.6e-140

89.08

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

A0A5D3BJ53 U3 small nucleolar ribonucleoprotein IMP4

6.6e-140

89.08

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV
        RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKRDFLGV
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

A0A6J1DUL2 U3 small nucleolar ribonucleoprotein protein IMP4

1.1e-134

85.96

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKP PTELRNEEAALRKEIELED+ TAVPRTHIDDEYAN SEVDPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLI+SHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTANILKHLFPVPKPDTKRV+TFANQSDYISFRHHIYEK GG KSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

A0A6J1FFE4 U3 small nucleolar ribonucleoprotein protein IMP4

1.8e-137

86.99

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

A0A6J1K117 U3 small nucleolar ribonucleoprotein protein IMP4

1.5e-136

86.64

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELED+LTAVPRTHIDDEYANAS++DPKILITTSRDPSAPLTQF
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
        AKELKIVFPNAQRMNRGGQVI+EIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              LGE
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        RTAN+LKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEK GGAKSIELKEIGPRFELRLYQIK+GTVDQTEAQNEWVIRPYM+TTKKR FLG
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

SwissProt top hits

e value

%identity

Alignment

Q0VD01 U3 small nucleolar ribonucleoprotein protein IMP4

2.9e-76

52.25

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  ER   E+K K+R ALEE +  PTELR E  AL+  +E +D        H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NV                           LG+R +
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA

Query:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        +IL++LFPVPK D++RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I++GT++Q   A  EW   PY  T  KR FL
Subjt:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q5PQR5 U3 small nucleolar ribonucleoprotein protein IMP4

8.4e-76

51.56

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE +  PTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NV                           LG+R +
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA

Query:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        +IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I++GT++Q   A  EW   PY  T +KR FL
Subjt:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q5R947 U3 small nucleolar ribonucleoprotein protein IMP4

1.4e-75

51.56

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE +  PTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NV                           LG+R +
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA

Query:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        +IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I++GT++Q   A  EW   PY  T +KR FL
Subjt:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q8VHZ7 U3 small nucleolar ribonucleoprotein protein IMP4

8.4e-76

51.56

Show/hide

Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R + EKK +++ ALEE +  PTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NV                           LG+R +
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA

Query:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        +IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I++GT++Q   A  EW   PY  T +KR FL
Subjt:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Q96G21 U3 small nucleolar ribonucleoprotein protein IMP4

1.4e-75

51.56

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        MLRR  RLRREYLYRK+ E  +R   E+K ++R ALEE +  PTELR E  AL+  +E +D       +H+DDEY  A   DPK++ITTSRDPS+ L  F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA
        AKELK+VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+SHLPFGPTAYF L NV                           LG+R +
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV---------------------------LGERTA

Query:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL
        +IL++LFPVPK D+ RV+TFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I++GT++Q   A  EW   PY  T +KR FL
Subjt:  NILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKEIGPRFELRLYQIKMGTVDQ-TEAQNEWVIRPYMRTTKKRDFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G63780.1 Ribosomal RNA processing Brix domain protein

1.5e-112

69.28

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Query:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF
        M RR +RL++EY+YRKSLEG ER +YE+KR IREAL+EGKP PTELRN EA LR+EI+LED+ TAVPR+HIDDEYANA+E DPKIL+TTSR+PSAPL +F
Subjt:  MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQF

Query:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE
         KELK VFPN+QR+NRG QVISEIIET R+H+FTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV                              +G+
Subjt:  AKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV------------------------------LGE

Query:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEK-HGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG
        R  NILKH+FP PK D KR+VTF+NQSDYISFR+H+Y+K  GG KSIELKEIGPRFELRLYQ+K+GTV+Q EA+ EWVIRPYM T+KKR F+G
Subjt:  RTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEK-HGGAKSIELKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLG

AT4G01560.1 Ribosomal RNA processing Brix domain protein

3.3e-27

32.8

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Query:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEGKPFPTEL---------RNEEAALRKEIELEDELTAVPRTHIDDEYAN---ASEVDPKILITT
        +R  +Y K    K+    EK++KIR        ALE G+  P ++          ++E   R +   ++EL A     ID +  N     E+ PK+L+TT
Subjt:  RREYLYRKSLEGKERLLYEKKRKIR-------EALEEGKPFPTEL---------RNEEAALRKEIELEDELTAVPRTHIDDEYAN---ASEVDPKILITT

Query:  SRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV----------------------
         R  S        EL  V PN+    RG   + +I+E     +FT +I+VH +R  PD L+I  LP GPTA+F L N+                      
Subjt:  SRDPSAPLTQFAKELKIVFPNAQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNV----------------------

Query:  -----LGERTANILKHLFPVPKPD--TKRVVTFANQSDYISFRHHIY--------EKHGGAKSIE--LKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRP
             LG R     + LFP P P+   +RVVTF NQ D+I FRHH Y           G  ++I+  L+E GPRF L+L  ++ GT D    + EWV +P
Subjt:  -----LGERTANILKHLFPVPKPD--TKRVVTFANQSDYISFRHHIY--------EKHGGAKSIE--LKEIGPRFELRLYQIKMGTVDQTEAQNEWVIRP

Query:  YMRTTKKRDFL
         M T+++R FL
Subjt:  YMRTTKKRDFL

Sequences

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CDS sequence

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ATGTTGCGAAGAAACATTCGGCTGAGGAGGGAGTATTTGTACAGAAAGAGTTTAGAAGGCAAGGAGCGTTTGCTTTATGAGAAGAAGCGGAAGATTAGAGAAGCCCTAGA
AGAGGGAAAACCTTTTCCTACTGAATTACGTAATGAGGAGGCGGCACTTCGTAAAGAAATTGAACTTGAGGATGAGCTCACAGCAGTCCCAAGGACACACATCGATGATG
AATATGCGAATGCTTCAGAAGTTGATCCTAAAATTTTGATAACTACATCTCGGGATCCAAGCGCACCTTTGACACAGTTTGCAAAGGAATTAAAAATTGTTTTCCCCAAT
GCACAACGAATGAATCGTGGTGGTCAGGTGATCTCAGAGATTATAGAGACCTGCCGCGCTCACGAATTTACAGATGTTATTTTAGTTCATGAACATCGTGGTGTGCCAGA
TGGTTTAATTATCAGCCATCTTCCTTTTGGTCCAACGGCATATTTCGGATTGTTGAATGTGTTGGGTGAAAGGACGGCCAATATCTTAAAGCATCTATTTCCTGTGCCGA
AGCCAGATACCAAACGTGTGGTTACTTTTGCTAATCAGTCTGACTATATTTCATTCAGGCATCATATTTATGAGAAGCATGGAGGTGCCAAATCAATTGAGCTGAAGGAG
ATTGGTCCACGGTTTGAATTGCGACTGTACCAGATAAAGATGGGAACTGTAGACCAAACTGAAGCACAGAATGAATGGGTGATTAGACCATACATGAGAACAACCAAGAA
ACGCGATTTCCTTGGTGTTTGA

mRNA sequence

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TTTAGGGTTAACTTTGCGTTTTCAGATTTATTTTTATGCAAAATTTTTATTTCATTAAACTATTGAAGTTAATGAGTTCAGGAAAATTTTTAGTAAATTAGCTGAAGTTG
TCCTTCCCTTAACGATCGTAAGCCTAAGCCCTTCCTTTTCCCTAAACCCTATACACCAGCCACTTGAACACTGCTCCGCCTCACGCTGCCGCCACCGCCACCGCCACCGT
CACCGTCACCGCACGCTGTATTCCCAGCTGCCACGAAACAGTGTTCATCTCCTAACCCGCGCCGTCGGCGAGATAGCGCTTCCACCACTCATTTTACAGATTCCCAAGAC
TCTGGGTGGGGGTTTGGCGAATAGATCAAAACAATGTTGCGAAGAAACATTCGGCTGAGGAGGGAGTATTTGTACAGAAAGAGTTTAGAAGGCAAGGAGCGTTTGCTTTA
TGAGAAGAAGCGGAAGATTAGAGAAGCCCTAGAAGAGGGAAAACCTTTTCCTACTGAATTACGTAATGAGGAGGCGGCACTTCGTAAAGAAATTGAACTTGAGGATGAGC
TCACAGCAGTCCCAAGGACACACATCGATGATGAATATGCGAATGCTTCAGAAGTTGATCCTAAAATTTTGATAACTACATCTCGGGATCCAAGCGCACCTTTGACACAG
TTTGCAAAGGAATTAAAAATTGTTTTCCCCAATGCACAACGAATGAATCGTGGTGGTCAGGTGATCTCAGAGATTATAGAGACCTGCCGCGCTCACGAATTTACAGATGT
TATTTTAGTTCATGAACATCGTGGTGTGCCAGATGGTTTAATTATCAGCCATCTTCCTTTTGGTCCAACGGCATATTTCGGATTGTTGAATGTGTTGGGTGAAAGGACGG
CCAATATCTTAAAGCATCTATTTCCTGTGCCGAAGCCAGATACCAAACGTGTGGTTACTTTTGCTAATCAGTCTGACTATATTTCATTCAGGCATCATATTTATGAGAAG
CATGGAGGTGCCAAATCAATTGAGCTGAAGGAGATTGGTCCACGGTTTGAATTGCGACTGTACCAGATAAAGATGGGAACTGTAGACCAAACTGAAGCACAGAATGAATG
GGTGATTAGACCATACATGAGAACAACCAAGAAACGCGATTTCCTTGGTGTTTGAGAAACTGCTAAAAAAGCAGATTGTAATCTATCTTATTATTATTATTAGTATTATT
TTGCATAATCACATTTTTCTTAAAGTTTCTATTTTGTTCGTTTGGTTCGGGATACCAAATTTTCTCTAAAATATTGATAGATTTAGTTGAGTCCTTGTATTAGAATGGTA
GTTTTGTTTTTTACCCAATGATTGTAGAAGTTTGAAGAGACATACACTTGAAATTTTGTGTGGAATTCAGACTATTAATGAAAATTTTAATTTGTAT

Protein sequence

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MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALEEGKPFPTELRNEEAALRKEIELEDELTAVPRTHIDDEYANASEVDPKILITTSRDPSAPLTQFAKELKIVFPN
AQRMNRGGQVISEIIETCRAHEFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVLGERTANILKHLFPVPKPDTKRVVTFANQSDYISFRHHIYEKHGGAKSIELKE
IGPRFELRLYQIKMGTVDQTEAQNEWVIRPYMRTTKKRDFLGV

Lsi09G008140 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome